Rv3245c - c.870G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
75 Sensitive
1 RR-TB
13 HR-TB
3 MDR-TB
1 Pre-XDR-TB
1 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 88 |
| La1.8.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.2.1.2 | 2 |
| La1.7;lineage4.9 | 4 |
| lineage2.1 | 1 |
| lineage4 | 7 |
| La1.6;lineage4 | 1 |
| lineage3.1;lineage9 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.4.1.1 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage2.2.1 | 7 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| 1 | |
| lineage4.2;lineage4.9 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.2.1 | 1 |
| lineage5.1.4 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.5 | 1 |
| La1.7 | 1 |
| lineage4.8 | 1 |
| lineage3 | 1 |
| La1.7;lineage4.3.4.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 144 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR349298 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR22251329 | Other | lineage2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR349299 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR12708416 | Sensitive | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR369158 | Other | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | SRR6046802 | Other | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR3797080 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675265 | Other | lineage4 | None | SRR5535933 | Other | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4830353 | Other | La1.7 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR11082050 | Sensitive | lineage4.8 | None | ERR400529 | Other | lineage3 | None | ERR11465802 | Other | La1.7;lineage4.3.4.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR11465801 | Other | lineage4.3.4.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR6046245 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None |
|---|
