Rv1630 - c.936C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
49 Sensitive
4 RR-TB
18 HR-TB
15 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
40 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 6 |
| lineage4.9 | 46 |
| lineage3.1.2.1 | 1 |
| lineage3 | 4 |
| lineage2.2.1 | 10 |
| M.canetti;lineage4.9 | 2 |
| 4 | |
| lineage1;lineage4.9 | 1 |
| lineage4.1.2.1 | 3 |
| lineage4.1.1.3 | 3 |
| lineage4.9;lineage9 | 1 |
| lineage6.1.1 | 2 |
| lineage4 | 4 |
| lineage4.3.3 | 2 |
| lineage4.6.2.2 | 3 |
| lineage5.2 | 2 |
| La3;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage1.2.2.1;lineage4.4.1.1 | 1 |
| lineage4.5 | 2 |
| lineage4.3.4 | 1 |
| lineage2.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage5.1.4 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.1 | 1 |
| lineage4.3 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 127 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29772597 | MDR-TB | lineage4.8 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR17832802 | HR-TB | lineage3 | None | SRR29096107 | Sensitive | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR9786843 | Other | None | ERR987722 | MDR-TB | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR2101101 | Sensitive | lineage4.8 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR400326 | Other | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR4812155 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | SRR26399255 | Sensitive | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR4815765 | Sensitive | lineage4.8 | gb | ERR9786594 | Sensitive | lineage4.6.2.2 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR11252736 | Other | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR330663 | Sensitive | lineage4.8 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR752229 | Other | lineage4.5 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176740 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045002 | RR-TB | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR3275450 | Other | lineage4 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR9786526 | Other | lineage4.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR867542 | HR-TB | lineage4.3 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR29097023 | Sensitive | lineage4.9 | None |
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