Rv0005 - c.1489_1491delCTAinsTG
Drug resistance types
52 Sensitive
7 RR-TB
49 HR-TB
14 MDR-TB
3 Pre-XDR-TB
1 XDR-TB
168 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 109 |
| lineage2.2.1 | 22 |
| lineage4.6.2.2 | 3 |
| La1.7;lineage4.9 | 1 |
| lineage4.1;lineage4.8 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.3.3 | 3 |
| lineage2.1;lineage4.9 | 14 |
| lineage4 | 8 |
| La3;lineage2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage3 | 2 |
| La3 | 2 |
| lineage4.1.1.3 | 2 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage3;lineage4.9 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| 20 | |
| lineage4.9;lineage6.3 | 5 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage4.2.1 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.1 | 5 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 6 |
| lineage4.1.3 | 2 |
| lineage4.1.1.1 | 3 |
| lineage4.3.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1;lineage4.9 | 2 |
| lineage4.1.1.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage2.2.2 | 1 |
| lineage4.7 | 1 |
| lineage4.8 | 2 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3.1 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1;lineage4.1.2 | 1 |
| lineage4.8.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.1;lineage4.9 | 2 |
| lineage1.1.1;lineage4 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage2.2 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.1.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 294 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1035122 | HR-TB | lineage4.9 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR9786525 | RR-TB | lineage4.1;lineage4.8 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045706 | Other | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675387 | Other | lineage4.9 | None | SRR1181289 | RR-TB | lineage2.2.1 | None | ERR363490 | Other | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4178226 | Sensitive | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR363453 | Other | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | SRR1172817 | Other | La3 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR363446 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675572 | Other | None | ERR1063896 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR9786604 | Other | None | ERR9117709 | Other | None | ERR234659 | HR-TB | None | SRR25827682 | Other | None | SRR3675236 | Other | None | SRR12708416 | Sensitive | None | SRR1196583 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR702406 | Other | lineage2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR3675214 | Other | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR369163 | Other | lineage4.9 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR349264 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675522 | Other | lineage4.9 | None | ERR751326 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1196566 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR3675311 | Other | lineage4.9 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR2446382 | Other | lineage4 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363479 | Other | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6045503 | Other | lineage4.9 | None | ERR349266 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1184381 | MDR-TB | None | ERR9786843 | Other | None | SRR6789626 | Other | None | ERR11252736 | Other | lineage4.9 | None | SRR7535086 | Other | None | SRR18213713 | HR-TB | None | ERR212001 | HR-TB | None | SRR28351554 | Other | La1.6;lineage4 | None | ERR4816999 | Other | None | SRR28119777 | Other | lineage4.9 | None | ERR6358979 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR373945 | Other | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4818252 | HR-TB | lineage4.1.1.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR363421 | Other | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046245 | Other | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR067699 | HR-TB | La1;lineage2;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173400 | Other | lineage4.9 | None | ERR4811031 | Other | lineage4.5 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR4811030 | Other | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR363498 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR9971112 | HR-TB | lineage2.2.1 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR363502 | Other | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1180137 | RR-TB | lineage2.2.1 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4815752 | Other | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR369159 | Other | lineage4.9 | None | ERR736856 | HR-TB | lineage4.9 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR9786671 | Other | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR1184372 | MDR-TB | None | ERR4407463 | HR-TB | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR349300 | Other | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR3275450 | Other | lineage4 | None | ERR363499 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR3675292 | Sensitive | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045526 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR6865502 | Sensitive | lineage4 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173118 | Other | lineage2.2.1 | None | ERR323066 | HR-TB | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR1173384 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7496472 | Other | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None |
|---|
