Rv0682 - c.57C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
65 Sensitive
1 RR-TB
22 HR-TB
2 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
28 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 75 |
| La1.7;lineage4.9 | 3 |
| La1;lineage2;lineage4.9 | 1 |
| La3;lineage4.9 | 8 |
| lineage2.2.1 | 4 |
| lineage2.2.1.2 | 1 |
| 1 | |
| lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage4.1.2.1 | 1 |
| lineage4 | 5 |
| lineage4.2.1 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.9;lineage7 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage3;lineage4.9 | 1 |
| La1.2.BCG | 1 |
| lineage5.1.4 | 1 |
| La1.6;lineage4 | 1 |
| La3;lineage4 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 119 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4769474 | HR-TB | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR3675387 | Other | lineage4.9 | None | ERR926154 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR369159 | Sensitive | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR926157 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675522 | Other | lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR369161 | Sensitive | lineage4.9 | None | SRR5341293 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR349266 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR2517475 | Other | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR3283028 | Other | La3;lineage4 | None | ERR3275450 | Other | lineage4 | None | ERR369151 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR363490 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None |
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