Rv0668 - c.1029G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
13 RR-TB
62 HR-TB
16 MDR-TB
19 Pre-XDR-TB
0 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.2 | 19 |
| lineage2.2;lineage4 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2.1 | 30 |
| lineage2.2.1.1 | 2 |
| lineage4.5 | 3 |
| lineage3 | 12 |
| lineage2.2.2;lineage4 | 5 |
| lineage4 | 2 |
| lineage4.9 | 21 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 3 |
| La2;lineage2.2 | 1 |
| lineage4.6.5 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2 | 1 |
| lineage2.2.1;lineage2.2.2 | 4 |
| lineage2.2.1;lineage4 | 4 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4.8 | 3 |
| lineage4.3.3;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage2;lineage4 | 1 |
| 2 | |
| lineage3.1.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2;lineage4.9 | 2 |
| La1.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 139 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013595 | Sensitive | lineage3 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR1013610 | Sensitive | lineage4 | None | SRR6046250 | Other | lineage4.9 | None | ERR4819546 | HR-TB | lineage3 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1049023 | HR-TB | lineage4.9 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1048980 | HR-TB | lineage3 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR4816322 | Other | lineage4.9 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR3675507 | Other | lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR1013596 | Sensitive | lineage3 | None | ERR067712 | Sensitive | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1049040 | HR-TB | lineage2 | None | ERR4816470 | HR-TB | lineage3 | None | SRR1013613 | Sensitive | lineage2.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | SRR18511647 | Sensitive | lineage2.2.1 | None | SRR6832644 | Other | lineage4.3.3;lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR4817069 | RR-TB | None | SRR1048981 | HR-TB | lineage3 | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048996 | Sensitive | lineage4.5 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR1013602 | HR-TB | lineage2.2.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1013597 | Sensitive | lineage2.2.2;lineage4 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR4769418 | Other | La1.2 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4821053 | Other | lineage3 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013614 | Sensitive | lineage2.2.1 | None | SRR1013617 | Sensitive | lineage2.2.1;lineage4 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013608 | Sensitive | lineage2.2.2 | None | SRR15315797 | RR-TB | lineage2.2.1;lineage4 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR1013618 | RR-TB | lineage2.2.1;lineage4 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR1013609 | Sensitive | lineage4 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4798823 | HR-TB | None | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1013598 | Sensitive | lineage2.2.2;lineage4 | None | SRR1013612 | Sensitive | lineage4.5 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR6359066 | HR-TB | lineage4.9 | None |
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