Rv0006 - c.-458T>C


Drug resistance types
24 Sensitive 4 RR-TB 69 HR-TB 19 MDR-TB 6 Pre-XDR-TB 2 XDR-TB 141 Other
lineage Counts
lineage Count
lineage4.9 76
lineage4.8.1 1
La3;lineage2.1;lineage4.9 3
M.canetti;lineage2.1;lineage6.3 1
lineage2.2 3
lineage3.1 1
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage4.3.4.2.1 4
La1.7;lineage4.9;lineage7 3
lineage4.1.2.1 7
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La1.7;lineage4.9 4
La3;lineage4.9 8
15
lineage4.2;lineage4.9 2
lineage4.4.1.1.1 1
lineage2.2.1 5
lineage2.1;lineage4.9 16
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4.9;lineage6.3 7
lineage2.1;lineage4.9;lineage6.3 8
lineage6.1.3 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;lineage2.1;lineage6.3 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage6.3.1 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.7 3
lineage2.1;lineage6.3 2
La1.7.1 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La3;lineage2.2.1 1
M.canetti;lineage1 1
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage1.2.2.2 1
lineage4.1.3 2
M.canetti;lineage2.1;lineage4.9 2
La1;lineage4.9 1
lineage4.9;lineage7 4
lineage2.1 3
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 2
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.6.2.2 1
lineage1.2.1.2.1 1
lineage4.1.1.3 1
M.canetti;lineage2.2 2
lineage4.3.3 3
lineage4.9;lineage6.1.3 1
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.2.1 1
La1.7.X-unk4;lineage4.9 1
lineage4.8 4
La2;lineage2.2 1
La3;lineage1.1.2 1
lineage3 3
La2;lineage4.9 1
M.canetti;lineage4.9 1
lineage2.2.1;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
lineage4.1.1.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage2.2.1.1 1
lineage2.2.1;lineage4.9 1
M.canetti;lineage4.2 1
La1.2.BCG 1
lineage4.6.3;lineage4.9 2
lineage2.1;lineage4.9;lineage7 1
lineage4.1.2 1
La1.2.BCG;La1.8.1 1
lineage4.5 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage4.8 2
La3;lineage2 1
M.canetti;lineage4.9;lineage9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage4 3
lineage2.2.1;lineage4 1
lineage1;lineage4.9 1
La1.7;lineage3.1;lineage4 1
La3;lineage4.3.4 1
lineage4.9;lineage9 1
lineage4.3.4.1 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.3.1 1
La3 1
spoligotype Counts
spoligotype Count
None 265
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3797046 HR-TB lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR1034634 HR-TB lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR4799513 HR-TB lineage2.2 None
SRR1184346 HR-TB lineage3.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR11465511 Other lineage4.3.4.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675311 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR736831 Other lineage4.9 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
ERR11252612 Other La3;lineage4.9 None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR234659 Other None
ERR9786671 Other None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR9786604 Other None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1167384 Other La3;lineage4.9 None
SRR6046382 Sensitive lineage2.2.1 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR13265528 Other lineage4.9;lineage6.3 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR181744 HR-TB La3;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
SRR3675275 Other lineage4.9 None
ERR11252736 Other lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
SRR18213713 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR9787139 Other lineage6.3.1 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR3797069 Other lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR1792478 HR-TB La1.7.1 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341330 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR161037 Other lineage4.9 None
SRR28119753 Other lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
ERR13272906 Sensitive lineage4.7 None
SRR1196546 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
SRR3675236 Other None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4797201 Other lineage1.2.2.2 None
SRR1165699 Other lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR473332 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR9786645 Other lineage4.6.2.2 None
ERR3797070 Other lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR9657183 Sensitive lineage1.2.1.2.1 None
SRR1184381 MDR-TB None
SRR3675221 Other lineage4.9 None
ERR212001 HR-TB None
ERR4814352 Other lineage2.2.1 None
ERR11465024 Other lineage4.1.1.3 None
ERR9786601 Other lineage4.1.2.1 None
SRR12142341 HR-TB lineage2.1 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR3675539 HR-TB lineage4.9;lineage7 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4819422 HR-TB lineage4.9 None
ERR4819781 Other lineage2.2.1 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR3675572 Other None
SRR6046385 Sensitive lineage4.9 None
SRR6046878 Other lineage4.9 None
ERR4817915 Other lineage4.9 None
ERR6866807 Other lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR11081266 Sensitive lineage4.7 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR4796577 HR-TB None
SRR1173778 Other lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR387051 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
ERR4817735 Other lineage4.8 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR26399973 Other La3;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR5153091 HR-TB lineage4.3.3 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6046046 Other lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR4816585 Other lineage2.2 None
ERR2229084 Sensitive lineage4.8 dk
ERR4817434 Other lineage3 None
ERR4799025 Other lineage4.8 None
SRR1169249 Other lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR4815604 Other None
SRR1175487 Sensitive lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR181887 Other lineage4.9 None
SRR10809074 Sensitive lineage4.9 None
ERR1063855 Other lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR6046593 Other lineage4.9 None
ERR4816999 Other None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR4814672 Sensitive lineage3 None
SRR29231479 RR-TB lineage4.9 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR4800341 Other lineage3 None
ERR13265748 Other lineage4.9;lineage6.3 None
ERR11465232 Sensitive lineage4.1.2.1 None
ERR702406 Other lineage2.1 None
ERR1063849 HR-TB lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR1173400 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR5341418 Other La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
SRR6079962 HR-TB lineage2.2.1.1 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR4798262 HR-TB La1.2.BCG None
SRR7131023 Other lineage4.1.2.1 None
ERR3797081 Sensitive lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR181824 HR-TB lineage4.9 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR4818347 Other lineage4.1.2 None
SRR1175513 Sensitive lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786569 Other lineage4.8 None
ERR4818929 HR-TB lineage4.9 None
ERR752229 Other lineage4.5 None
SRR1196583 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
SRR5341373 Other lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR20969677 HR-TB La3;lineage2 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR6046210 Other lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6045053 Other lineage4 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR323107 Sensitive lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
ERR1035157 Other lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR212123 Other lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR6789626 Other None
ERR4769450 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR29017461 Other La3;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR3283044 Other lineage4 None
ERR212138 HR-TB lineage4.9 None
SRR7535086 Other None
ERR176643 Other La3;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR3797047 MDR-TB lineage4.9 None
SRR1172817 Other La3 None
SRR7496509 Other None
ERR176751 Other lineage4.9 None
ERR12015083 Other La3;lineage4.8 None