Rv0006 - c.-458T>C
Drug resistance types
46 Sensitive
2 RR-TB
146 HR-TB
12 MDR-TB
9 Pre-XDR-TB
0 XDR-TB
97 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 55 |
| 128 | |
| lineage2.2 | 7 |
| lineage4.4.1.1.1 | 2 |
| lineage2 | 4 |
| lineage4.3.3 | 4 |
| lineage2.2.1 | 13 |
| lineage3.1 | 2 |
| lineage3 | 4 |
| La1.7.1 | 1 |
| lineage4.5 | 2 |
| lineage4.9;La3 | 1 |
| lineage4.7 | 2 |
| lineage4 | 40 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage4.1.1 | 1 |
| lineage4.8 | 3 |
| lineage4.3.4.2.1 | 4 |
| lineage4.3.4 | 1 |
| lineage4.3 | 1 |
| lineage2.1 | 1 |
| lineage4.8;La3 | 2 |
| lineage4.1.2 | 1 |
| La1.8.1 | 1 |
| lineage4.1 | 2 |
| lineage4.1.1.2 | 1 |
| lineage4.1.2.1 | 8 |
| lineage2.2.1.1 | 1 |
| La2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4;lineage3.1 | 1 |
| lineage1.2.2.2 | 1 |
| La1 | 1 |
| lineage3.1.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.2.2 | 1 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| La3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 312 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR15368973 | Other | None | SRR12416824 | HR-TB | None | SRR14088376 | MDR-TB | lineage3 | None | SRR14782405 | HR-TB | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR11081266 | Sensitive | lineage4.7 | None | SRR19304036 | HR-TB | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969677 | HR-TB | lineage2 | None | SRR21732980 | Other | lineage4.3.3 | None | ERR176778 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR4815604 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176779 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR158583 | HR-TB | None | SRR3675465 | HR-TB | None | ERR2229084 | Sensitive | lineage4.8 | dk | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675270 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | ERR4814672 | Sensitive | lineage3 | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | ERR212001 | HR-TB | None | SRR3675311 | Other | None | SRR3675456 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR181887 | HR-TB | None | ERR176643 | HR-TB | None | ERR176651 | HR-TB | None | ERR176751 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR4816999 | Other | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212123 | Other | None | SRR3675555 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675572 | Other | None | ERR212033 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR212125 | HR-TB | lineage4 | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | ERR4817434 | Other | lineage3 | None | ERR4816585 | Other | lineage2.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR4819462 | Other | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341418 | Other | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341330 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | SRR5341315 | Sensitive | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821057 | HR-TB | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | ERR2693227 | Other | lineage4.9 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046210 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046460 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046482 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR323037 | HR-TB | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR294266 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR502889 | Other | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | SRR7535086 | Other | None | SRR8217918 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | ERR323108 | HR-TB | lineage4 | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR323107 | Other | lineage4 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063857 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063855 | Other | lineage4 | None | ERR1063862 | HR-TB | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063859 | HR-TB | None | ERR133986 | HR-TB | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283027 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3445504 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445501 | HR-TB | None | ERR3445503 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR3797046 | HR-TB | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4407463 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473332 | Other | lineage4 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769521 | HR-TB | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4798406 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4811022 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR702406 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736856 | HR-TB | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117709 | HR-TB | None | ERR7821163 | Other | lineage2.2.1 | None | ERR752229 | Other | lineage4.5 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9657183 | Sensitive | lineage1.2.1.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1169306 | Other | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172717 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None |
|---|
