Rv1908c - p.Ser140Asn
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
112 HR-TB
51 MDR-TB
35 Pre-XDR-TB
1 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 10 |
| lineage2;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| lineage4.2.2.2 | 23 |
| lineage2.2.1 | 38 |
| lineage4.9 | 29 |
| La1.7;lineage4.9 | 3 |
| lineage3 | 8 |
| lineage1.1.1.1 | 3 |
| lineage4.3.4.1 | 2 |
| lineage4.4.2 | 3 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.1.1.3 | 3 |
| lineage2.2.2 | 20 |
| lineage2.2.2;lineage4 | 6 |
| lineage2.2.1;lineage2.2.2 | 5 |
| La1.7.1 | 1 |
| lineage2.2;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage2.2.2;lineage4.9 | 2 |
| lineage2.2.1.1;lineage4 | 1 |
| lineage2.1 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage1.2.1.2.1;lineage4 | 1 |
| lineage1.2.1.2 | 4 |
| lineage4.4.1.2 | 2 |
| lineage4.5 | 2 |
| lineage4.3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2.1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.3.2.1 | 2 |
| lineage4.3.4 | 1 |
| lineage4.8 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage2.2;lineage4 | 2 |
| lineage2 | 1 |
| lineage4 | 1 |
| lineage1.1.2 | 1 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 199 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16087928 | MDR-TB | lineage4.1.2.1 | None | SRR1048991 | HR-TB | lineage2;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3132274 | MDR-TB | lineage4.1.2.1 | None | SRR1165366 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR12142369 | MDR-TB | lineage2.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR11489005 | MDR-TB | lineage3 | None | SRR26399274 | HR-TB | lineage1.1.1.1 | None | SRR29016996 | MDR-TB | lineage4.3.4.1 | None | ERR2446183 | MDR-TB | lineage4.2.2.2 | nl | ERR3275336 | MDR-TB | lineage4.2.2.2 | nl | SRR1048865 | Pre-XDR-TB | lineage4.4.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR29094371 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2.2 | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02398710 | MDR-TB | lineage2.2.2 | None | SAMN02360563 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013554 | MDR-TB | lineage2.2.2;lineage4 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR1048870 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4830044 | HR-TB | lineage2.2.1 | None | ERR7737624 | MDR-TB | lineage4.2.2.2 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1048852 | HR-TB | lineage2.2;lineage4.9 | None | ERR13260565 | MDR-TB | lineage4.1.2.1 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | ERR4830039 | HR-TB | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR2935863 | MDR-TB | lineage4.1.1.1 | None | SRR1048988 | HR-TB | lineage2.2.1 | None | SRR1049027 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1049026 | HR-TB | lineage2.2;lineage4.9 | None | SRR1048853 | HR-TB | lineage2;lineage4.9 | None | ERR2510326 | MDR-TB | lineage3 | pk | ERR2510638 | MDR-TB | lineage3 | pk | SRR29081570 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR1048968 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1013599 | HR-TB | lineage2.2.1.1;lineage4 | None | SRR30180462 | MDR-TB | lineage2.1 | None | SRR1049006 | HR-TB | lineage2.2.2;lineage4 | None | ERR4830822 | Pre-XDR-TB | lineage4.2.2.2 | et | SAMN02360583 | HR-TB | lineage2.2.2 | None | SRR1048966 | MDR-TB | lineage2.2.1 | None | SRR27069387 | MDR-TB | lineage2.2.1 | None | ERR1555050 | MDR-TB | lineage4.3.4.1 | None | ERR4830830 | Pre-XDR-TB | lineage4.2.2.2 | et | SRR28393351 | MDR-TB | lineage4.1.2.1 | None | SRR1048981 | HR-TB | lineage3 | None | ERR4830463 | HR-TB | lineage1.1.1.1 | vn | ERR181824 | HR-TB | lineage4.9 | None | SRR1048969 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049022 | HR-TB | lineage2.2.2;lineage4.9 | None | SRR1048886 | HR-TB | lineage2.2.2;lineage4 | None | SRR1049007 | HR-TB | lineage2.2.2 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1013621 | Pre-XDR-TB | lineage2.2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | ERR552843 | HR-TB | lineage4.1.3 | cg | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR1048980 | HR-TB | lineage3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR17657941 | MDR-TB | lineage4.1.2.1 | None | SRR28351325 | MDR-TB | lineage3 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1013622 | Pre-XDR-TB | lineage2.2.2 | None | SRR1167151 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR1048993 | HR-TB | lineage4.9 | None | SRR1162897 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR3132157 | MDR-TB | lineage1.2.1.2.1;lineage4 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR12416830 | MDR-TB | lineage2.2.2 | None | SRR6785277 | HR-TB | lineage2.2.1 | None | SRR21747060 | MDR-TB | lineage1.2.1.2 | None | SRR29096626 | MDR-TB | lineage4.2.2.2 | None | ERR13232724 | MDR-TB | lineage2.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | SRR1013568 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR12416818 | Pre-XDR-TB | lineage4.3 | None | SRR1013553 | MDR-TB | lineage2.2.2 | None | SRR1048983 | HR-TB | lineage2.2.1.1 | None | ERR552844 | HR-TB | lineage4.1.3 | None | SRR1048866 | Pre-XDR-TB | lineage4.4.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR13290601 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR11488933 | MDR-TB | lineage3 | None | SRR1013607 | HR-TB | lineage2.2.2 | None | SRR1048982 | HR-TB | lineage2.2.1.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR1049041 | HR-TB | lineage2.2.1;lineage4 | None | SRR1048986 | HR-TB | lineage2.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR1013578 | HR-TB | lineage2.2.2;lineage4 | None | SRR1048975 | HR-TB | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR26056455 | MDR-TB | lineage4.1.2.1 | None | ERR9119435 | HR-TB | lineage1.1.1.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | ERR3132148 | MDR-TB | lineage4.1.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR1144759 | HR-TB | lineage2.2.2;lineage4 | None | SRR1013567 | Pre-XDR-TB | lineage2.2.2 | None | ERR13290600 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR22873609 | XDR-TB | lineage2.2.1 | None | ERR4830805 | MDR-TB | lineage4.2.2.2 | et | SRR1049023 | HR-TB | lineage4.9 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | SRR28393263 | MDR-TB | lineage4.1.2.1 | None | ERR4830803 | Pre-XDR-TB | lineage4.2.2.2 | et | ERR4830845 | MDR-TB | lineage4.2.2.2 | et | ERR176778 | HR-TB | lineage4.9 | None | ERR4011971 | MDR-TB | lineage4.2.2.2 | None | ERR7737654 | MDR-TB | lineage4.2.2.2 | None | SRR2101316 | HR-TB | lineage4.3.2.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR1166935 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR2517569 | MDR-TB | lineage4.2.2.2 | nl | SRR1013577 | HR-TB | lineage2.2.2 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | ERR3287877 | MDR-TB | lineage4.1.1.3 | pe | SRR22873605 | Pre-XDR-TB | lineage2.2.1 | None | SRR21576603 | MDR-TB | lineage1.2.1.2 | None | SRR6930927 | MDR-TB | lineage1.2.1.2 | None | ERR11081700 | MDR-TB | lineage4.8 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR29096523 | MDR-TB | lineage4.2.2.2 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048868 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | HR-TB | lineage2.2;lineage4 | None | SRR1048869 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SRR1049040 | HR-TB | lineage2 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR18665477 | MDR-TB | lineage4.1.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SRR1048998 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.1;lineage2.2.2 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | SAMN02360577 | HR-TB | lineage3 | None | SAMN02360562 | Pre-XDR-TB | lineage4.4.2 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR30180231 | MDR-TB | lineage1.2.1.2 | None | ERR4816478 | HR-TB | lineage4 | None | ERR13266238 | HR-TB | lineage2.2.1 | None | ERR13290599 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR4798946 | MDR-TB | lineage1.1.2 | in | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR1023502 | MDR-TB | lineage2;lineage4 | None | ERR13290598 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR13284235 | MDR-TB | lineage4.8 | None | SAMN02414970 | Pre-XDR-TB | lineage4.2.2.2 | se | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048992 | HR-TB | lineage2.2;lineage4 | None | ERR4830799 | MDR-TB | lineage4.2.2.2 | et | SRR6896464 | HR-TB | lineage4.3.2.1 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1048965 | HR-TB | lineage2.2.1 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR1213825 | MDR-TB | lineage4.1.2.1 | pe | SRR1013602 | HR-TB | lineage2.2.1 | None |
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