Rv0005 - c.1572C>T


Drug resistance types
35 Sensitive 9 RR-TB 97 HR-TB 30 MDR-TB 5 Pre-XDR-TB 3 XDR-TB 175 Other
lineage Counts
lineage Count
lineage4.9 155
lineage2.1;lineage4.9;lineage6.3 10
lineage4.3.3 2
lineage4.3.4.2.1 5
lineage2.2.1 14
M.canetti;lineage2.1;lineage4.9 2
lineage4.1 1
La3;lineage4.8 2
lineage2.1;lineage4.9 14
lineage1.2.2.2 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.4.1.2 1
lineage4.1.2.1 12
La1.7;lineage4.9 2
lineage4.6.2.2 1
lineage4.7 2
lineage4.2;lineage4.9 2
16
lineage4.9;lineage6.3 7
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.8;lineage4.9 2
lineage4.4.1.1.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
lineage4 7
lineage2.2.1;lineage4 1
lineage2.2.1.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage2.1 3
lineage1.2.1.1 1
La1.7;lineage4.9;lineage7 3
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.1.3 2
lineage3 4
lineage4.3.2.1 1
lineage4.3.2;lineage4.9 1
lineage2.2.1.2;lineage7 1
lineage4.9;lineage7 2
La2;lineage4.9;lineage9 1
La1.8.1 1
lineage1.2.1.2 1
La2;lineage4.9 2
lineage4.3.4.1 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
M.canetti;lineage4.9 2
lineage4.8.1 1
lineage4.1;lineage4.9 1
La3 2
lineage4.1.1.3 2
La1.7;lineage4.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
La3;lineage2.1;lineage4.9;lineage6.3 3
La3;lineage2.1;lineage6.3 1
M.canetti;lineage2.2 2
lineage4.2.1.1;lineage4.3.3 1
lineage4.3.4 1
La1.2 1
La3;M.canetti;lineage2.2.1 1
lineage2.2.2 1
La3;lineage4.9 1
La3;lineage1.1.2 1
lineage2.2 2
lineage4.8 2
La1;lineage2;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage2.2.1;lineage3 1
lineage1;lineage4.9 1
lineage4.1.1.1 1
La3;lineage2 1
lineage4.2;lineage4.8.1;lineage4.9 2
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.6.3;lineage4.9;lineage6.3 1
lineage1.1.3.1 1
lineage3.1.2.1;lineage4 1
lineage4.5 1
lineage2.1;lineage6.3 2
lineage1.1.2 1
lineage6.3.1 1
La1.7.1 1
lineage4.1.2 1
La3;M.canetti;lineage4.9 1
lineage4.6.1.1 1
lineage4.9;lineage9 2
lineage2.2.1;lineage6.3 1
La1.7;lineage3.1;lineage4 1
lineage4.2.2.2 1
lineage3.1 1
La1.7.1;La1.7.X-unk4 1
lineage2.1;lineage4.3.2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 354
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR323062 HR-TB lineage4.9 None
ERR363498 Other lineage4.9 None
SRR6046210 Other lineage4.9 None
SRR3675585 HR-TB lineage4.9 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR4796254 Other lineage4.9 None
SRR21732980 Other lineage4.3.3 None
SRR1183111 HR-TB lineage4.9 None
ERR736831 Other lineage4.9 None
ERR11465509 Sensitive lineage4.3.4.2.1 None
SRR9971112 HR-TB lineage2.2.1 None
SRR5341453 Other lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363502 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR9786440 Other lineage4.1 None
ERR12015083 Other La3;lineage4.8 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR1158918 Other lineage4.9 None
ERR4797201 Other lineage1.2.2.2 None
ERR369156 Sensitive lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR373947 Other lineage4.9 None
ERR11465511 Other lineage4.3.4.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR9786645 Other lineage4.6.2.2 None
SRR3675209 Sensitive lineage4.9 None
SRR7496523 Other lineage4.7 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR363446 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
ERR1063896 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR234659 HR-TB None
SRR25827682 Other None
ERR9787197 Other None
SRR3675236 Other None
ERR6866807 RR-TB lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
ERR363449 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR176651 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR3675549 Other lineage4.9 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR363421 Other lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR3675265 Other lineage4 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR702406 Other lineage2.1 None
ERR4814734 Other lineage1.2.1.1 None
SRR1172310 MDR-TB lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341300 HR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR349265 Other lineage4.9 None
ERR349330 Sensitive lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR124636 HR-TB lineage4.9 None
ERR4816470 HR-TB lineage3 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR7496471 Sensitive lineage4 None
ERR1063846 HR-TB lineage4.9 None
ERR349299 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR7496472 Other lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR5431730 Other La1.8.1 None
SRR6045706 Other lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
ERR323039 MDR-TB La2;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR363445 Other lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675246 Other lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR12416840 MDR-TB lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR1172817 Other La3 None
SRR6045191 Sensitive lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
SRR23961559 Other La1.7;lineage4.2 None
SRR6045892 Sensitive lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926155 Other lineage4.9 None
ERR363479 Other lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341469 HR-TB lineage4.9 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR369159 Other lineage4.9 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR9786671 Other None
SRR1184372 MDR-TB None
ERR11252736 Other lineage4.9 None
SRR18213713 HR-TB None
ERR4816999 Other None
ERR349300 Other lineage4.9 None
ERR137286 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR9971114 Other lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR373945 Other lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
ERR9786515 Other lineage4.1.2.1 None
ERR736817 HR-TB lineage4.3.4 None
SRR23961549 Other La1.2 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR369158 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR26399973 Other La3;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR4188247 HR-TB lineage4.9 None
ERR926165 Other lineage4.9 None
ERR363474 Sensitive lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
SRR1180226 HR-TB lineage4.9 None
ERR2229084 Sensitive lineage4.8 dk
ERR369163 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
ERR4818536 Other lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR1173778 Other lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR4800545 Other lineage3 in
SRR3675232 Other lineage4.1.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR2027263 Other lineage4 None
ERR373946 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR6865502 Sensitive lineage4 None
ERR323066 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
SRR6789621 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341461 HR-TB lineage4.9 None
SRR9971270 RR-TB lineage2.2.1 None
ERR349264 Other lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR323037 Other lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR4596910 Sensitive lineage4.9 None
SRR1172728 RR-TB La3 None
SRR10809074 HR-TB lineage4.9 None
ERR363490 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR926164 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
ERR363453 Other lineage4.9 None
SRR3675457 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR4797184 HR-TB lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
ERR363447 Other lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR5341467 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR502510 HR-TB lineage4.9 None
SRR3675311 Other lineage4.9 None
ERR363500 Other lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6045503 Other lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR349266 Other lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR502511 HR-TB lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR27069434 MDR-TB lineage2.2.1 None
SRR1184381 MDR-TB None
ERR9786604 Other None
ERR4815604 Other None
SRR6789626 Other None
SRR7535086 Other None
SRR28351455 Other lineage3.1.2.1;lineage4 None
ERR2514692 Other None
SRR28119805 Other lineage4.9 None
ERR752229 Other lineage4.5 None
ERR369162 Other lineage4.9 None
SRR1196583 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR4797264 HR-TB lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR20632814 Sensitive lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
ERR9787139 Other lineage6.3.1 None
ERR369157 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR363499 Other lineage4.9 None
ERR369151 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
SRR1159378 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3283055 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR6866639 HR-TB lineage4.9 None
SRR6045832 Other lineage4.9 None
SRR6046141 Other lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR363506 Sensitive lineage4.9 None
ERR176741 Other lineage4.9 None
ERR3283044 Other lineage4 None
SRR5153091 HR-TB lineage4.3.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR323115 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR6358755 Other lineage4.6.1.1 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR1063883 HR-TB lineage4.9 None
ERR363426 Sensitive lineage4.9 None
ERR400345 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR6046897 Sensitive lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR1173118 Other lineage2.2.1 None
ERR2513470 Other lineage4.2.2.2 None
ERR176778 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
SRR3675248 Other lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None