Rv0005 - c.1572C>T


Drug resistance types
35 Sensitive 9 RR-TB 97 HR-TB 30 MDR-TB 5 Pre-XDR-TB 3 XDR-TB 175 Other
lineage Counts
lineage Count
La3;M.canetti;lineage2.2.1 1
lineage4.4.1.1.1 1
lineage4.9 155
lineage2.1;lineage4.9;lineage6.3 10
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La2;lineage2.2 1
lineage4 7
lineage2.2.1;lineage4 1
lineage2.2.1.1 1
lineage4.7 2
La3;lineage1.1.2 1
lineage2.2 2
lineage4.8 2
lineage2.2.1 14
lineage4.3.4.2.1 5
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;lineage2.1;lineage4.9;lineage6.3 3
lineage2.2.1;lineage3 1
lineage2.1;lineage4.9 14
lineage3 4
lineage4.1.2.1 12
La1.7;lineage4.9;lineage7 3
La2;lineage4.9 2
lineage4.3.4.1 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1;lineage4.9 1
lineage4.1 1
lineage2.1 3
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.2 1
La1.7;lineage4.9 2
16
lineage4.9;lineage6.3 7
lineage4.5 1
lineage4.1.1.3 2
La3;lineage4.8 2
lineage2.2.2 1
La3;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
lineage1.2.1.1 1
lineage4.3.3 2
lineage4.1.3 2
lineage4.2.2.2 1
lineage3.1 1
lineage1;lineage4.9 1
La3 2
M.canetti;lineage2.1;lineage4.9 2
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.9;lineage7 2
M.canetti;lineage4.9 2
lineage4.8.1 1
lineage1.2.2.2 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.4.1.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.2.2 1
lineage3.1.2.1;lineage4 1
lineage2.1;lineage6.3 2
lineage4.3.4 1
lineage4.8;lineage4.9 2
lineage4.2;lineage4.9 2
lineage6.3.1 1
La1.7.1 1
lineage4.1.2 1
La3;M.canetti;lineage4.9 1
La1;lineage2;lineage4.9 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage4.9;lineage9 2
lineage2.2.1;lineage6.3 1
La1.7;lineage3.1;lineage4 1
La1.7.1;La1.7.X-unk4 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.3.2.1 1
lineage4.1.1.1 1
lineage4.3.2;lineage4.9 1
lineage2.2.1.2;lineage7 1
La2;lineage4.9;lineage9 1
La1.8.1 1
lineage1.2.1.2 1
La3;lineage2 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.1;lineage4.9 1
lineage4.6.3;lineage4.9;lineage6.3 1
M.canetti;lineage2.2 2
lineage1.1.3.1 1
La3;lineage2.1;lineage6.3 1
lineage4.2.1.1;lineage4.3.3 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage1.1.2 1
La1.2 1
spoligotype Counts
spoligotype Count
None 354
Geographic prevalence
Country level data for this variant is available for 2 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
ERR369157 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR363499 Other lineage4.9 None
ERR369151 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR3675265 Other lineage4 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
SRR6079962 HR-TB lineage2.2.1.1 None
ERR4819932 Other lineage4.7 None
ERR3283055 HR-TB lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR926165 Other lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR12142339 HR-TB lineage2.2.1 None
ERR176741 Other lineage4.9 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR5341300 HR-TB lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4818536 Other lineage4.9 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
ERR2027263 Other lineage4 None
ERR349330 Sensitive lineage4.9 None
SRR3675461 RR-TB lineage4.9 None
ERR323066 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR4816470 HR-TB lineage3 None
ERR926160 Other lineage4.9 None
SRR10315567 HR-TB lineage2.2.1 None
SRR3675248 Other lineage4.9 None
ERR349299 Other lineage4.9 None
SRR7496472 Other lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR3273109 HR-TB lineage4 None
SRR3675585 HR-TB lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675221 Other lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR323037 Other lineage4.9 None
ERR108471 HR-TB lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR9971112 HR-TB lineage2.2.1 None
ERR4814352 Other lineage2.2.1 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR363509 Sensitive lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR3675457 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
ERR373947 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR23961559 Other La1.7;lineage4.2 None
ERR502510 HR-TB lineage4.9 None
ERR363500 Other lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR7131023 Other lineage4.1.2.1 None
SRR11662690 HR-TB lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341469 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR363446 Other lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR3675572 Other None
SRR27069434 MDR-TB lineage2.2.1 None
ERR1063896 HR-TB None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR234659 HR-TB None
SRR25827682 Other None
SRR3675236 Other None
ERR752229 Other lineage4.5 None
SRR1196583 Other lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
SRR6046611 Sensitive lineage4.9 None
ERR363449 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4800341 HR-TB lineage3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
ERR9786515 Other lineage4.1.2.1 None
SRR6045010 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
ERR369158 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
SRR18910194 HR-TB lineage2.2.2 None
SRR26399973 Other La3;lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR4188247 HR-TB lineage4.9 None
ERR363474 Sensitive lineage4.9 None
ERR702406 Other lineage2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
ERR363506 Sensitive lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR736848 Other lineage4.9 None
ERR926157 Other lineage4.9 None
ERR3283044 Other lineage4 None
SRR5153091 HR-TB lineage4.3.3 None
ERR2229084 Sensitive lineage4.8 dk
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR323115 Sensitive lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR4800545 Other lineage3 in
SRR3675232 Other lineage4.1.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR373946 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR2513470 Other lineage4.2.2.2 None
ERR124636 HR-TB lineage4.9 None
ERR176778 HR-TB lineage4.9 None
SRR6789621 Other lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR9971270 RR-TB lineage2.2.1 None
ERR323062 HR-TB lineage4.9 None
ERR363498 Other lineage4.9 None
SRR6046210 Other lineage4.9 None
ERR926163 Other lineage4.9 None
ERR751326 Other lineage4.9 None
ERR3797070 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR323107 HR-TB lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR736831 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR926164 Other lineage4.9 None
ERR363502 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675246 Other lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR363453 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR4797184 HR-TB lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR4797201 Other lineage1.2.2.2 None
ERR369156 Sensitive lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR294266 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR11465511 Other lineage4.3.4.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR9786601 Other lineage4.1.2.1 None
SRR3675311 Other lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR1034634 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
ERR349266 Other lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR369159 Other lineage4.9 None
ERR502511 HR-TB lineage4.9 None
ERR9786671 Other None
SRR1184372 MDR-TB None
SRR28351455 Other lineage3.1.2.1;lineage4 None
ERR2514692 Other None
ERR9787197 Other None
SRR28119805 Other lineage4.9 None
ERR369162 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR4831616 MDR-TB lineage2.2.1 None
SRR20632814 Sensitive lineage4.9 None
ERR736817 HR-TB lineage4.3.4 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR6046295 MDR-TB lineage4.2;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR363421 Other lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR1159378 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR349296 Sensitive lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR20969708 HR-TB lineage2.2 None
ERR6866639 HR-TB lineage4.9 None
SRR6045832 Other lineage4.9 None
SRR6046141 Other lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR1180226 HR-TB lineage4.9 None
ERR369163 Other lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR12142341 HR-TB lineage2.1 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
ERR181887 Other lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
ERR349265 Other lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR363426 Sensitive lineage4.9 None
ERR400345 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR6865502 Sensitive lineage4 None
SRR6046897 Sensitive lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR1173118 Other lineage2.2.1 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR400336 Sensitive lineage4.9 None
SRR7496471 Sensitive lineage4 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR6511621 HR-TB lineage4.9 None
ERR349264 Other lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
ERR1035122 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR6045371 Other lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR5431730 Other La1.8.1 None
SRR6045706 Other lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR4796254 Other lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR11465509 Sensitive lineage4.3.4.2.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
ERR363490 Other lineage4.9 None
SRR12416842 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR12015083 Other La3;lineage4.8 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR3797046 HR-TB lineage4.9 None
ERR363447 Other lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR12416840 MDR-TB lineage4.9 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR1172817 Other La3 None
SRR6045191 Sensitive lineage4.9 None
ERR11465024 Other lineage4.1.1.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045892 Sensitive lineage4.9 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR6865513 Other lineage4.1.2.1 None
ERR736834 HR-TB lineage4.9 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR926155 Other lineage4.9 None
ERR363479 Other lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR6045503 Other lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR3675209 Sensitive lineage4.9 None
SRR7496523 Other lineage4.7 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
SRR1184381 MDR-TB None
SRR6789626 Other None
ERR11252736 Other lineage4.9 None
SRR7535086 Other None
SRR18213713 HR-TB None
ERR4816999 Other None
ERR349300 Other lineage4.9 None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR9971114 Other lineage2.2.1 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR176651 Other lineage4.9 None
ERR373945 Other lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR23961549 Other La1.2 None
SRR3675549 Other lineage4.9 None