lineage | Count |
---|---|
lineage2.2.1 | 146 |
lineage4.2.1 | 2 |
lineage4.3.3 | 15 |
lineage4;lineage2.2.1 | 1 |
lineage4.3.4.1 | 2 |
lineage2.2.1.1 | 9 |
lineage4.3.4.2 | 7 |
lineage5.2 | 1 |
lineage4.6.4 | 1 |
lineage4.2.1.1 | 1 |
lineage1.1.3.1 | 2 |
lineage3 | 6 |
lineage4.6.1 | 4 |
lineage4.2.2.2 | 1 |
lineage4.5 | 1 |
lineage3.1.2.1 | 1 |
lineage4.1.2.1 | 3 |
lineage4.1.1.3;lineage2.2.1 | 1 |
lineage4 | 2 |
lineage4.3.3;lineage4.3.2 | 2 |
La1.8.1 | 1 |
2 | |
lineage2.2 | 3 |
lineage4.3.4.2.1 | 1 |
lineage4.3.2 | 1 |
lineage2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 217 |
ID | Drug resistance | Lineage | Country iso2 | ERR2509897 | MDR-TB | lineage2.2.1 | gb | ERR2510251 | MDR-TB | lineage4.2.1 | None | ERR751591 | Pre-XDR-TB | lineage4.3.3 | pe | ERR2512930 | Pre-XDR-TB | lineage2.2.1 | gb | SRR5266538 | Pre-XDR-TB | lineage4.3.3 | ru | ERR2515513 | Pre-XDR-TB | lineage2.2.1 | za | ERR2516396 | MDR-TB | lineage2.2.1 | be | ERR2513850 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819434 | Other | lineage4;lineage2.2.1 | None | ERR2516817 | MDR-TB | lineage2.2.1 | gb | ERR2515606 | MDR-TB | lineage2.2.1 | za | ERR2515708 | Pre-XDR-TB | lineage2.2.1 | za | ERR2515835 | MDR-TB | lineage2.2.1 | za | ERR2517054 | MDR-TB | lineage2.2.1 | gb | ERR2516391 | Pre-XDR-TB | lineage4.3.3 | be | ERR2516177 | MDR-TB | lineage2.2.1 | be | ERR2517036 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2514646 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2515920 | Pre-XDR-TB | lineage2.2.1 | za | ERR2516710 | MDR-TB | lineage4.3.3 | pe | ERR2515112 | MDR-TB | lineage2.2.1 | za | ERR2653218 | MDR-TB | lineage4.3.4.1 | None | SRR5067544 | MDR-TB | lineage2.2.1.1 | vn | ERR2653118 | MDR-TB | lineage4.3.3 | None | ERR275183 | MDR-TB | lineage4.3.4.2 | pt | ERR2653115 | Pre-XDR-TB | lineage4.3.3 | None | ERR2653162 | MDR-TB | lineage4.3.4.2 | None | ERR2707071 | MDR-TB | lineage4.3.4.1 | cd | ERR2653241 | MDR-TB | lineage4.3.4.2 | None | ERR2706978 | MDR-TB | lineage5.2 | cd | SRR16156701 | MDR-TB | lineage2.2.1 | None | ERR4822318 | MDR-TB | lineage2.2.1 | de | ERR5987385 | MDR-TB | lineage2.2.1 | None | ERR6362478 | MDR-TB | lineage2.2.1 | None | ERR9120142 | MDR-TB | lineage2.2.1 | None | SRR10869278 | Pre-XDR-TB | lineage2.2.1 | None | ERR9120003 | MDR-TB | lineage2.2.1 | None | ERR4829978 | MDR-TB | lineage4.6.4 | None | ERR8975786 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715041 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR6797841 | Other | lineage1.1.3.1 | None | ERR4828971 | Pre-XDR-TB | lineage3 | None | ERR5917991 | MDR-TB | lineage2.2.1 | za | ERR9993007 | Pre-XDR-TB | lineage2.2.1 | None | SRR1140582 | MDR-TB | lineage4.6.1 | None | SRR10869170 | MDR-TB | lineage2.2.1 | None | SRR10869224 | MDR-TB | lineage2.2.1 | None | SRR11972260 | HR-TB | lineage2.2.1 | None | SRR14802023 | Pre-XDR-TB | lineage4.2.1 | None | SRR16156694 | MDR-TB | lineage2.2.1 | None | SRR16156801 | MDR-TB | lineage2.2.1 | None | SRR16156828 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156803 | Pre-XDR-TB | lineage2.2.1 | None | SRR7829596 | Pre-XDR-TB | lineage3 | None | ERR5987347 | MDR-TB | lineage2.2.1 | None | ERR4831475 | MDR-TB | lineage3 | None | ERR4831831 | MDR-TB | lineage2.2.1.1 | vn | ERR4831529 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831571 | MDR-TB | lineage2.2.1 | None | ERR4831576 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831583 | MDR-TB | lineage2.2.1 | None | ERR4831589 | MDR-TB | lineage2.2.1 | None | ERR5865743 | MDR-TB | lineage4.3.3 | None | ERR9120014 | MDR-TB | lineage2.2.1 | None | ERR7911614 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911655 | Pre-XDR-TB | lineage2.2.1 | za | SRR10869274 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156848 | MDR-TB | lineage2.2.1 | None | SRR10869251 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869157 | MDR-TB | lineage2.2.1 | None | SRR13583337 | MDR-TB | lineage4.3.4.2 | None | SRR16157048 | Pre-XDR-TB | lineage2.2.1 | None | SRR5486880 | RR-TB | lineage4.3.3 | None | SRR3675285 | Pre-XDR-TB | lineage2.2.1 | gb | SRR7517727 | HR-TB | lineage4.2.2.2 | None | SRR6257087 | MDR-TB | lineage2.2.1 | ru | ERR4831867 | MDR-TB | lineage2.2.1.1 | vn | ERR5865109 | Pre-XDR-TB | lineage4.3.3 | None | ERR4831893 | MDR-TB | lineage2.2.1.1 | vn | ERR551621 | MDR-TB | lineage2.2.1 | sz | ERR4831870 | MDR-TB | lineage2.2.1.1 | vn | ERR502923 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865111 | Pre-XDR-TB | lineage4.3.3 | None | ERR9120073 | MDR-TB | lineage2.2.1 | None | ERR983236 | MDR-TB | lineage2.2.1 | None | ERR9120125 | MDR-TB | lineage2.2.1 | None | ERR970413 | MDR-TB | lineage2.2.1 | None | ERR9120176 | MDR-TB | lineage2.2.1 | None | DRR130059 | Pre-XDR-TB | lineage4.5 | None | SRR16156850 | MDR-TB | lineage2.2.1 | None | SRR16156839 | MDR-TB | lineage2.2.1 | None | SRR1140677 | MDR-TB | lineage4.6.1 | None | SRR11972412 | MDR-TB | lineage2.2.1 | None | ERR1023523 | MDR-TB | lineage2.2.1 | None | ERR040123 | MDR-TB | lineage3.1.2.1 | ug | ERR1034802 | MDR-TB | lineage4.1.2.1 | pe | ERR1035007 | MDR-TB | lineage2.2.1 | za | ERR1035059 | MDR-TB | lineage4.1.1.3;lineage2.2.1 | za | ERR1035023 | MDR-TB | lineage2.2.1 | za | ERR1035015 | MDR-TB | lineage2.2.1 | za | ERR1035271 | Pre-XDR-TB | lineage4.3.4.2 | br | ERR1035075 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035074 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035079 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035193 | MDR-TB | lineage4.3.4.2 | pt | ERR10748106 | XDR-TB | lineage2.2.1 | None | ERR10748092 | Pre-XDR-TB | lineage2.2.1 | None | ERR10680207 | MDR-TB | lineage4.1.2.1 | None | ERR10748110 | MDR-TB | lineage2.2.1 | None | ERR10748107 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748126 | MDR-TB | lineage2.2.1 | None | ERR10748115 | MDR-TB | lineage2.2.1 | None | ERR10748156 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748135 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748151 | MDR-TB | lineage2.2.1 | None | ERR10748118 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748131 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748196 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748153 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR10748324 | MDR-TB | lineage2.2.1 | None | ERR10748305 | MDR-TB | lineage2.2.1 | None | ERR10748322 | MDR-TB | lineage2.2.1 | None | ERR10748200 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748286 | MDR-TB | lineage2.2.1 | None | ERR10748292 | MDR-TB | lineage2.2.1 | None | ERR10748313 | MDR-TB | lineage2.2.1 | None | ERR10748330 | MDR-TB | lineage2.2.1 | None | ERR10748375 | MDR-TB | lineage2.2.1 | None | ERR10748343 | MDR-TB | lineage2.2.1 | None | ERR10748356 | MDR-TB | lineage2.2.1 | None | ERR10748377 | MDR-TB | lineage2.2.1 | None | ERR10748332 | MDR-TB | lineage2.2.1 | None | ERR10748341 | MDR-TB | lineage2.2.1 | None | ERR10748348 | MDR-TB | lineage2.2.1 | None | ERR10748386 | MDR-TB | lineage2.2.1 | None | ERR10748390 | MDR-TB | lineage2.2.1 | None | ERR10748396 | MDR-TB | lineage2.2.1 | None | ERR10748393 | MDR-TB | lineage2.2.1 | None | ERR10748430 | MDR-TB | lineage2.2.1 | None | ERR10748402 | MDR-TB | lineage2.2.1 | None | ERR10748410 | MDR-TB | lineage2.2.1 | None | ERR10748411 | MDR-TB | lineage2.2.1 | None | ERR10748439 | MDR-TB | lineage2.2.1 | None | ERR10748438 | MDR-TB | lineage2.2.1 | None | ERR10748466 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748465 | MDR-TB | lineage2.2.1 | None | ERR10748483 | MDR-TB | lineage2.2.1 | None | ERR10748521 | MDR-TB | lineage2.2.1 | None | ERR10748526 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748530 | MDR-TB | lineage2.2.1 | None | ERR10748541 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748555 | MDR-TB | lineage2.2.1 | None | ERR10748514 | MDR-TB | lineage2.2.1 | None | ERR10748539 | MDR-TB | lineage2.2.1 | None | ERR11044154 | MDR-TB | lineage2.2.1 | None | ERR11043607 | MDR-TB | lineage4 | None | ERR4011052 | Pre-XDR-TB | lineage2.2.1 | None | ERR3287763 | MDR-TB | lineage4.3.3 | pe | ERR11044145 | MDR-TB | lineage2.2.1 | None | ERR3287569 | MDR-TB | lineage4.3.3 | None | ERR4276897 | MDR-TB | lineage2.2.1 | None | ERR4011078 | MDR-TB | lineage2.2.1 | None | ERR4011081 | Pre-XDR-TB | lineage2.2.1 | None | ERR4178275 | MDR-TB | lineage4.3.3;lineage4.3.2 | None | ERR4187723 | Other | La1.8.1 | None | ERR4011067 | MDR-TB | lineage2.2.1 | None | ERR403276 | Pre-XDR-TB | lineage2.2.1 | None | ERR4178261 | MDR-TB | lineage4.3.3;lineage4.3.2 | None | ERR4553541 | MDR-TB | lineage1.1.3.1 | None | ERR4553594 | MDR-TB | None | ERR4553578 | MDR-TB | lineage2.2 | None | ERR4553607 | MDR-TB | None | ERR4596920 | MDR-TB | lineage4.3.4.2.1 | None | ERR4797421 | MDR-TB | lineage4.3.4.2 | in | ERR4423575 | MDR-TB | lineage2.2 | None | ERR4423576 | RR-TB | lineage2.2 | None | ERR4796775 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4809192 | Pre-XDR-TB | lineage2.2.1 | za | ERR4799177 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4813933 | MDR-TB | lineage4.1.2.1 | br | ERR4810980 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4813835 | Pre-XDR-TB | lineage4.3.2 | None | ERR1873487 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873527 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911151 | Pre-XDR-TB | lineage2.2.2 | vn | ERR7911382 | Pre-XDR-TB | lineage4.3.3 | us | ERR8975804 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975521 | MDR-TB | lineage2.2.1 | None | ERR4815372 | Pre-XDR-TB | lineage3 | gb | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911527 | Pre-XDR-TB | lineage2.2.1 | za | ERR8699107 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911540 | Pre-XDR-TB | lineage2.2.1 | za | ERR4813215 | Pre-XDR-TB | lineage4.3.3 | None | SAMN02381037 | MDR-TB | lineage4.6.1 | None | ERR8975648 | XDR-TB | lineage2.2.1 | None | ERR8975852 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975697 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911574 | Pre-XDR-TB | lineage2.2.1 | za | SRR6046243 | Pre-XDR-TB | lineage2.2.1 | gb | ERR8975802 | MDR-TB | lineage2.2.1 | None | SAMEA2534018 | MDR-TB | lineage2.2.1.1 | de | SAMN02380996 | MDR-TB | lineage4.6.1 | ug | ERR7911072 | MDR-TB | lineage2.2.1 | za | ERR1873465 | Pre-XDR-TB | lineage2.2.1 | za | ERR2677415 | MDR-TB | lineage4 | de | ERR7911534 | Pre-XDR-TB | lineage2.2.1 | za | ERR8975647 | MDR-TB | lineage2.2.1 | None | SRR6256975 | MDR-TB | lineage2.2.1 | None | ERR2510628 | Pre-XDR-TB | lineage3 | None | ERR2512718 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2510660 | Pre-XDR-TB | lineage3 | it | ERR2510678 | Pre-XDR-TB | lineage2.2.1 | it | ERR8699850 | MDR-TB | lineage2.2.1 | None | ERR779909 | MDR-TB | lineage4.3.3 | pe | ERR7911618 | Pre-XDR-TB | lineage2.2.1 | za |
---|