ERR4829978
|
MDR-TB
|
lineage4.6.4
|
None
|
SRR29017326
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9120147
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112906
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093228
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653118
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29050895
|
MDR-TB
|
lineage4.7
|
None
|
ERR13288810
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806979
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551548
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR10869194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362820
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14807534
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR16156801
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156828
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093490
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120126
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120142
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11068535
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR3675285
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR1035023
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR16370391
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7070092
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2514646
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR10748153
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SAMN02381037
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR9806697
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093646
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156805
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29051332
|
MDR-TB
|
lineage4.7
|
None
|
ERR10748196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748286
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025512
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2706978
|
MDR-TB
|
lineage5.2
|
cd
|
ERR5987327
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515513
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7362005
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813835
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
SRR16156790
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4596920
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9806946
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093169
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156242
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975802
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534018
|
MDR-TB
|
lineage2.2.1.1
|
de
|
ERR5987385
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748324
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869117
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831576
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7737684
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062886
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR10748151
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02380996
|
MDR-TB
|
lineage4.6.1.1
|
ug
|
SRR10869119
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035075
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR8975647
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576543
|
MDR-TB
|
lineage4.5
|
None
|
SRR16156854
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207236
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992713
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4831893
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR4553578
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR10112897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055878
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911574
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4011067
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869130
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987347
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156694
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4553607
|
HR-TB
|
lineage1.1.3.1
|
None
|
ERR9120143
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802023
|
HR-TB
|
lineage4.2.1
|
None
|
SRR10869274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869251
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869131
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911614
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR5987270
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4423576
|
RR-TB
|
lineage2.2.1
|
None
|
SRR16156752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987452
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120003
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987316
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR779909
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR5865744
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR998856
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911655
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9119895
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120072
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992980
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR983236
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285218
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775081
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4815372
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR4831870
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR9119853
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362185
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551621
|
MDR-TB
|
lineage2.2.1
|
sz
|
SRR29056075
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748348
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119885
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119854
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119835
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662659
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049723
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR10748386
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748430
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551622
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26331628
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516817
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR970413
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806951
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035271
|
Pre-XDR-TB
|
lineage4.3.4.2
|
br
|
ERR10748118
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806986
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112851
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29056090
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972412
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748466
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864738
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362476
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653115
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864739
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025477
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025725
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156701
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055517
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394189
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1140582
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR9992796
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773801
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2512718
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR13253330
|
XDR-TB
|
lineage4.5
|
None
|
ERR7362012
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869281
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR29096583
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4813933
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR7911072
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR16156839
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069788
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748539
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025612
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8699107
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289586
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13286190
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865110
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9806977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5917991
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR8025699
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26331652
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096845
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096622
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680207
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28858755
|
XDR-TB
|
lineage4.3.4.1
|
None
|
SRR16156827
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16157047
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975804
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR502923
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987446
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362478
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975521
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120125
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782547
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29056309
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29230991
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4797421
|
MDR-TB
|
lineage4.3.4.2
|
in
|
ERR7911527
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10869224
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035015
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR751591
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR551549
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4831831
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SRR16156222
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4011052
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9807029
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510251
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR6362197
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510660
|
Pre-XDR-TB
|
lineage3
|
it
|
ERR10748305
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26331591
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9120176
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6797841
|
Other
|
lineage1.1.3.1
|
None
|
ERR9807001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10610118
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873487
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR10748115
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025684
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2509897
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR10869098
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287569
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29093312
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093719
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093771
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517727
|
Other
|
lineage4.2.2.2
|
None
|
SRR29055870
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869071
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748322
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285194
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16157048
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8774370
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9119770
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289292
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9907787
|
Pre-XDR-TB
|
lineage4.3.4.1
|
None
|
ERR2514137
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515112
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR16156787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9120014
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6865432
|
MDR-TB
|
lineage4.3.2;lineage4.3.3
|
None
|
SRR16156833
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034802
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR2515835
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR6362271
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017628
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR1873465
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
DRR130059
|
XDR-TB
|
lineage4.5
|
None
|
ERR5865109
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR11044145
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156271
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748411
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748390
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156849
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21887667
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987406
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362045
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975786
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831589
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865743
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16156677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035059
|
MDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
za
|
ERR4822318
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR4011078
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR970447
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9225002
|
MDR-TB
|
lineage4.7
|
None
|
ERR5987377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4809192
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR2515606
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR6256975
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257087
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4011081
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869275
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156850
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093179
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748135
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987313
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1035074
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911151
|
Pre-XDR-TB
|
lineage2.2.2
|
vn
|
SRR10869157
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576694
|
MDR-TB
|
lineage4.5
|
None
|
ERR4178275
|
MDR-TB
|
lineage4.3.2;lineage4.3.3
|
None
|
ERR10112877
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748521
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362969
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517054
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR10748514
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119870
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8774371
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4276897
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7829596
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR9119977
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120127
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093671
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539317
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055587
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715041
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR2677415
|
MDR-TB
|
lineage4
|
de
|
SRR29093526
|
MDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR29094016
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284008
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156221
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748200
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748092
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869278
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156835
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394042
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR10869041
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5486880
|
RR-TB
|
lineage4.3.3
|
None
|
SRR28239562
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28393995
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR28394209
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR13288995
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10748126
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120146
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156737
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096624
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510628
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4553594
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR4831529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975697
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13180361
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR14802076
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR16156829
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156838
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13288783
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8699850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR970445
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156783
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055835
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093956
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987265
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748332
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056040
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056044
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864740
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748410
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748526
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813215
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7068912
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096367
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510678
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4896324
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256306
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119750
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025723
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869141
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4423575
|
RR-TB
|
lineage2.2.1
|
None
|
ERR2517036
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR10748343
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044154
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806903
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748313
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911540
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4810980
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR2707071
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
ERR2200066
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992973
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4831867
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR10748483
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093695
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156848
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046733
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975648
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR275183
|
MDR-TB
|
lineage4.3.4.2
|
pt
|
SRR16157050
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13288782
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13288802
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975852
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16156797
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6362831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653218
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR16156803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260505
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748530
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748375
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748465
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025605
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093155
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831571
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025492
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29289276
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR8025680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748107
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4553541
|
HR-TB
|
lineage1.1.3.1
|
None
|
ERR4796775
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR5987355
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035007
|
MDR-TB
|
lineage2.2.1
|
za
|
SRR10869038
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035193
|
MDR-TB
|
lineage4.3.4.2
|
pt
|
SRR16156857
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748396
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831583
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993007
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16156231
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653162
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29096520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1023523
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831475
|
MDR-TB
|
lineage3
|
None
|
ERR9120175
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156815
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653241
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR550721
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6046243
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR10748356
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120169
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748439
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2512930
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR29093347
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093295
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516177
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR10748541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748330
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27069397
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2513850
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR24256303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987232
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865111
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1035079
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR10748393
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987272
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987453
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517731
|
HR-TB
|
lineage4.2.2.2
|
None
|
SRR5266538
|
Pre-XDR-TB
|
lineage4.3.3
|
ru
|
ERR7911534
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR7911618
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR16156842
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112892
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112869
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873527
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR11043607
|
MDR-TB
|
lineage4
|
None
|
ERR6879050
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3287763
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR14088389
|
MDR-TB
|
lineage3
|
None
|
ERR13285217
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993211
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9907714
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4828971
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR9120173
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799177
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR10869172
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11775005
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9993250
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10748438
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29017262
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR9806976
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515920
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR13583337
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28239796
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR10748292
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362186
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10610320
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR29017142
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29096332
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096534
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393567
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5987246
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289516
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539428
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025645
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
SRR7069280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9120015
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055592
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29093658
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093814
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987331
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516391
|
Pre-XDR-TB
|
lineage4.3.3
|
be
|
ERR9806994
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21776300
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29093682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911382
|
Pre-XDR-TB
|
lineage4.3.3
|
us
|
ERR9120073
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120174
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29096376
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748377
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29056263
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055808
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798649
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR16156822
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864741
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515708
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR2516710
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11775007
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156795
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987286
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516396
|
MDR-TB
|
lineage2.2.1
|
be
|
ERR972795
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748402
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748555
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9806995
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19128052
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR040123
|
MDR-TB
|
lineage3.1.2.1
|
ug
|
ERR403276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869062
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10869170
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748106
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR10748110
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16156834
|
MDR-TB
|
lineage2.2.1
|
None
|