Run ID: ERR2510251
Sample name:
Date: 31-03-2023 18:38:05
Number of reads: 756563
Percentage reads mapped: 99.45
Strain: lineage4.2.1
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288933 | p.Tyr103* | stop_gained | 1.0 | pyrazinamide |
embB | 4247730 | p.Gly406Ala | missense_variant | 1.0 | ethambutol |
gid | 4407851 | c.351delG | frameshift_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576123 | p.Leu259Arg | missense_variant | 0.15 |
rpoB | 761032 | p.Gln409Arg | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304826 | c.1900delT | frameshift_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168746 | p.Gly623Ser | missense_variant | 1.0 |
PPE35 | 2169013 | p.Val534Leu | missense_variant | 0.3 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 1.0 |
Rv1979c | 2223284 | c.-120C>T | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289558 | c.-317C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.96 |
Rv3236c | 3612746 | c.370delG | frameshift_variant | 1.0 |
fbiB | 3641826 | p.Arg98* | stop_gained | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4267823 | c.1014G>C | synonymous_variant | 1.0 |
aftB | 4268435 | p.Phe134Leu | missense_variant | 0.15 |
aftB | 4268600 | c.237G>T | synonymous_variant | 0.33 |
ubiA | 4269719 | p.Ala39Ser | missense_variant | 0.96 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408149 | c.54T>C | synonymous_variant | 1.0 |