SRR6046482
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR4817692
|
HR-TB
|
lineage1.1.2;lineage4
|
None
|
SRR16156188
|
Sensitive
|
lineage4.9
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR5917710
|
Other
|
lineage4.1.2.1
|
None
|
SRR1181328
|
Other
|
lineage2.2.1
|
None
|
ERR5311082
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR3675481
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4798406
|
MDR-TB
|
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3
|
None
|
SRR3675561
|
Other
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311089
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675464
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR6045948
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR760733
|
MDR-TB
|
lineage4.1.2.1.1
|
None
|
SRR1173767
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR158583
|
MDR-TB
|
La3;M.canetti;lineage2;lineage4.2;lineage4.3
|
None
|
ERR3797062
|
RR-TB
|
lineage4.9
|
None
|
ERR176766
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR3675450
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR4831117
|
HR-TB
|
lineage4.9;lineage7
|
None
|
ERR3283017
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9
|
None
|
ERR502470
|
RR-TB
|
lineage4.9
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR1183144
|
Other
|
lineage2.2.1
|
None
|
ERR4813861
|
Other
|
lineage4.3.3
|
None
|
ERR403298
|
MDR-TB
|
M.canetti;lineage4.2
|
None
|
ERR5311090
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR323041
|
HR-TB
|
M.canetti;lineage2.1
|
None
|
ERR4814536
|
MDR-TB
|
M.canetti;lineage2.1;lineage3
|
None
|
SRR11662690
|
HR-TB
|
lineage4.9
|
None
|
ERR4815556
|
RR-TB
|
lineage3
|
None
|
SRR5341456
|
Other
|
lineage4.9
|
None
|
ERR4811493
|
HR-TB
|
lineage4.9
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
SRR6325448
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR126600
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR502889
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
SRR3675487
|
Other
|
M.canetti;lineage4.9
|
None
|
SRR7240492
|
HR-TB
|
La1.7.1
|
None
|
SRR3675558
|
HR-TB
|
M.canetti;lineage4.1.1.3;lineage6.3;lineage8
|
None
|
SRR1640750
|
Other
|
|
None
|
SRR3675568
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8
|
None
|
SRR3675444
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR133986
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
|
None
|
ERR3275196
|
Other
|
lineage2.2.1
|
nl
|
ERR323060
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311098
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR1034791
|
RR-TB
|
lineage4.9
|
None
|
ERR6358837
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
SRR3675586
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
SRR5485614
|
RR-TB
|
lineage4.9
|
None
|
SRR13861510
|
Other
|
lineage4.9
|
None
|
ERR176658
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675508
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3468607
|
Other
|
lineage4.9
|
None
|
ERR2693229
|
RR-TB
|
La3;M.canetti;lineage4.9
|
None
|
ERR1035239
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
ERR323063
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
SRR3675507
|
Other
|
lineage4.9
|
None
|
SAMN02585910
|
Other
|
lineage2.2.1
|
None
|
ERR067681
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR6046514
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675506
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR323034
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage3.1
|
None
|
ERR772255
|
MDR-TB
|
lineage2.1;lineage4.3.2
|
None
|
SRR5535933
|
Other
|
lineage4.9
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR5311100
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
ERR7801175
|
HR-TB
|
lineage4.6.5
|
None
|
ERR323036
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1163221
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2693228
|
RR-TB
|
lineage4.9
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR736863
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6325445
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR3275941
|
RR-TB
|
lineage4.3
|
nl
|
ERR5311103
|
RR-TB
|
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9
|
None
|
ERR323040
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR14801759
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR3675446
|
RR-TB
|
lineage4.9
|
None
|
SRR3675486
|
HR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR9786444
|
Sensitive
|
lineage4.8
|
None
|
SRR1062880
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR3468544
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR161033
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR5311091
|
Other
|
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
ERR4797588
|
MDR-TB
|
lineage3
|
None
|
ERR3283016
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR6325447
|
MDR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR1035162
|
Other
|
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9
|
None
|
SRR5709967
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2229143
|
RR-TB
|
lineage4.9
|
None
|
SRR6045290
|
RR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126618
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR7535086
|
Other
|
|
None
|
SRR3675518
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
|
None
|
ERR5311102
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN02414850
|
Other
|
lineage4.1.2.1
|
None
|
SRR1184024
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR1510066
|
RR-TB
|
lineage1.2.1.2.1
|
None
|
ERR8976043
|
HR-TB
|
lineage2.1;lineage2.2;lineage6.3
|
None
|
SRR5341418
|
Other
|
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7
|
None
|
SRR3675320
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.3.1;lineage4.9
|
None
|
ERR323033
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3077978
|
RR-TB
|
lineage1.1
|
None
|
ERR1873393
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283006
|
RR-TB
|
lineage4.9
|
None
|
ERR323054
|
MDR-TB
|
La3;M.canetti;lineage3.1
|
None
|
ERR9119096
|
RR-TB
|
lineage4.3.3
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
SRR13861553
|
Other
|
lineage4.9
|
None
|
SRR3675390
|
Other
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR5341412
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4817069
|
RR-TB
|
|
None
|
ERR6359045
|
Other
|
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3
|
None
|
ERR124652
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1162864
|
Other
|
lineage4.1.2.1
|
None
|
SRR6832787
|
Sensitive
|
lineage2.2.1
|
None
|
ERR4188322
|
Other
|
lineage4.6.4;lineage4.9
|
None
|
SRR6046397
|
Other
|
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3
|
None
|
SRR3675243
|
Other
|
lineage4.9
|
None
|
SRR3675545
|
Other
|
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
ERR3797016
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR038268
|
HR-TB
|
La3;M.canetti;lineage4.8;lineage4.9
|
None
|
ERR3445504
|
Other
|
lineage4.9;lineage6.1.3
|
None
|
ERR4596944
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR14782539
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR3675322
|
HR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR1175127
|
Other
|
lineage2.2.1.2
|
None
|
ERR4815079
|
RR-TB
|
lineage3
|
None
|
SRR12142339
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2693242
|
RR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR294248
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR5311083
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR3675482
|
Other
|
lineage4.9
|
None
|
SRR11662696
|
MDR-TB
|
La1.6;La3;M.canetti;lineage4.2.2
|
None
|
ERR5311079
|
Other
|
La1.6;La3;M.canetti;lineage4.2;lineage4.9
|
None
|
ERR124651
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR5341400
|
Sensitive
|
lineage4.9
|
None
|
SRR6046577
|
Other
|
lineage4.6.3;lineage4.9
|
None
|
ERR5311101
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR3675550
|
RR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR124642
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
|
None
|
SRR5341341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166821
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675269
|
RR-TB
|
lineage4.9
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR1873396
|
Pre-XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR13423649
|
Sensitive
|
lineage2.2.1
|
None
|
ERR5311078
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR323064
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SAMN02380990
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR9119138
|
RR-TB
|
M.canetti;lineage4.3.1;lineage4.9
|
None
|
SRR1791696
|
Other
|
La1.8.1
|
None
|
SRR6458421
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR278594
|
HR-TB
|
lineage2.1;lineage4.9
|
None
|
ERR1023295
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.1.2.1
|
None
|
SRR3675515
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR13423544
|
Other
|
lineage4.5
|
None
|
SRR6325444
|
MDR-TB
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR4188350
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR8217918
|
HR-TB
|
lineage4.9
|
None
|
SRR1181091
|
Other
|
lineage2.2.1.1
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
ERR5311099
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR126597
|
HR-TB
|
lineage4.4.1.2
|
None
|
SRR6046824
|
MDR-TB
|
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9
|
None
|
SRR1180172
|
Other
|
lineage2.2.1
|
None
|
ERR323055
|
MDR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1172796
|
Sensitive
|
lineage2.2.1.2
|
None
|
SRR16156697
|
RR-TB
|
lineage2.2.1
|
None
|
SRR3675494
|
RR-TB
|
lineage4.9
|
None
|
ERR5311096
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR5908228
|
RR-TB
|
lineage4.3.3
|
None
|
SRR1180147
|
Other
|
lineage2.2.1.1
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR323038
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR386953
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283025
|
MDR-TB
|
La1.7;lineage4.9
|
None
|
SRR3675554
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6325442
|
HR-TB
|
lineage2.1;lineage4.1.1.1;lineage6.3
|
None
|
ERR473314
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2509673
|
Other
|
lineage2.2.1
|
None
|
ERR4769497
|
Other
|
La1;lineage4.9
|
None
|
SRR6044815
|
Other
|
lineage4.9
|
None
|
SRR17567917
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR323047
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR3283048
|
Other
|
lineage4.9
|
None
|
ERR3439432
|
Other
|
M.canetti;lineage4.6.4;lineage4.9
|
None
|
SRR6045952
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3797023
|
HR-TB
|
La1.8.1
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR1140712
|
MDR-TB
|
lineage4.6.1.2
|
None
|
ERR4188342
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
SRR1165506
|
Other
|
lineage4.1.2.1
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR6358755
|
Other
|
lineage4.6.1.1
|
None
|
ERR2514327
|
HR-TB
|
lineage4.8
|
None
|
ERR323058
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2693239
|
RR-TB
|
M.canetti;lineage2.1;lineage4
|
None
|
ERR5311081
|
MDR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR8665994
|
Other
|
lineage4.9
|
None
|
ERR3797083
|
RR-TB
|
lineage4.9
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR6046299
|
Other
|
lineage4.3.1;lineage4.9;lineage6
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|
ERR126608
|
HR-TB
|
La3;M.canetti;lineage2.1;lineage4.9
|
None
|
SRR13861146
|
RR-TB
|
lineage4.9
|
None
|
SRR16156832
|
RR-TB
|
lineage2.2;lineage4
|
None
|
SRR6046492
|
Other
|
lineage4.9
|
None
|
ERR4596904
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4816551
|
HR-TB
|
lineage4.1.1.3
|
None
|
ERR2446566
|
Other
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|