Rv0667 - c.1291_1292delAGinsTC
Drug resistance types
14 Sensitive
27 RR-TB
84 HR-TB
20 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| 71 | |
| lineage4.9 | 25 |
| lineage3.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage4.1.2.1 | 10 |
| lineage4 | 7 |
| La1.8.1 | 4 |
| La1 | 1 |
| lineage3 | 9 |
| lineage3.1.1 | 2 |
| La1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage2.2.1 | 19 |
| lineage4.3.3 | 4 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.6.5 | 2 |
| lineage5.2 | 2 |
| lineage4.6.1.2 | 3 |
| lineage4.8 | 2 |
| lineage4.4.1.1 | 5 |
| lineage2.2.1.2 | 2 |
| lineage2.2.1.1 | 4 |
| lineage4.5 | 1 |
| lineage4.2.1 | 1 |
| lineage4.8;lineage2.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.2 | 2 |
| lineage4.1 | 2 |
| lineage7;lineage2.2.1.2 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage2.1 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.3 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.2.2.2 | 1 |
| lineage1.1 | 1 |
| lineage4.2.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 200 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323038 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | ERR323041 | HR-TB | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR133986 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR403298 | HR-TB | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1 | None | ERR4188372 | RR-TB | La1.8.1 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4187604 | RR-TB | La1.8.1 | None | ERR4188350 | HR-TB | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798406 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811493 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR6358837 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8976043 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1140712 | MDR-TB | lineage4.6.1.2 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173310 | MDR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR13861489 | Sensitive | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861553 | Sensitive | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR14801415 | Sensitive | lineage4.8;lineage2.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR1640750 | HR-TB | None | SRR16156832 | RR-TB | None | ERR4813861 | Other | lineage4.3.3 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR3675502 | Other | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675486 | HR-TB | None | SRR3675270 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675558 | HR-TB | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675383 | HR-TB | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675571 | HR-TB | None | ERR4817069 | RR-TB | None | SRR5341408 | Sensitive | lineage3 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4819017 | RR-TB | lineage3 | None | ERR2446566 | Other | lineage4.1 | None | ERR1035162 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR3275941 | RR-TB | lineage4.3 | nl | ERR2509673 | Other | lineage2.2.1 | None | ERR4820266 | RR-TB | lineage3 | None | SRR5341400 | HR-TB | lineage4 | None | ERR1034791 | RR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2229143 | Other | lineage4.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341456 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5485614 | RR-TB | None | SRR5341418 | Other | None | ERR2516626 | Sensitive | lineage4.3.4.1 | None | SRR5341432 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | ERR2693239 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6045053 | Other | None | SRR5535933 | HR-TB | None | ERR278594 | HR-TB | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6046046 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046492 | Other | None | SRR6046397 | Other | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR3077978 | Other | lineage1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR5311090 | HR-TB | None | SRR6982141 | RR-TB | lineage4.3.3 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR294248 | HR-TB | None | SRR6896383 | RR-TB | lineage4.4.1.1 | None | ERR323036 | HR-TB | None |
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