Rv3547 - c.-199G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
4 RR-TB
30 HR-TB
13 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 3 |
| 15 | |
| lineage4.9 | 21 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 10 |
| lineage4.1.2 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 4 |
| La1.7;lineage4.9 | 1 |
| lineage5.2 | 2 |
| lineage2.2.1 | 4 |
| La3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage2.2.1.1 | 2 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La2;lineage2.2 | 1 |
| La2;lineage4.9 | 1 |
| lineage2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 1 |
| lineage4.8 | 2 |
| lineage4.5 | 1 |
| lineage4.4.1.1 | 1 |
| M.canetti;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1167384 | Other | La3;lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29050651 | HR-TB | lineage4.3.4.1 | None | SRR1169249 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4797201 | Other | None | ERR4800341 | Other | None | SRR29050859 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4811075 | Other | None | ERR4811142 | RR-TB | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR7535086 | Other | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR29017367 | MDR-TB | lineage4.3.4.1 | None | ERR2653003 | Sensitive | lineage4.3.4.1 | None | ERR473332 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR6046485 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR4810741 | HR-TB | None | SRR12416824 | HR-TB | None | ERR3283021 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR29017357 | Sensitive | lineage4.3.4.1 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR1193784 | Sensitive | lineage4.3.4.1 | br | ERR2653154 | MDR-TB | lineage4.3.4.1 | None | SRR29050718 | HR-TB | lineage4.3.4.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR752229 | Other | lineage4.5 | None | ERR4811311 | Other | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR29017358 | MDR-TB | lineage4.3.4.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675441 | Other | lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1184294 | Other | lineage4.9 | None | SRR13583382 | HR-TB | lineage4.3.4.1 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR3283055 | HR-TB | lineage4.9 | None |
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