Rv1221 - c.378T>C


Drug resistance types
30 Sensitive 23 RR-TB 77 HR-TB 66 MDR-TB 3 Pre-XDR-TB 1 XDR-TB 74 Other
lineage Counts
lineage Count
lineage4.9 107
M.canetti;lineage2.1;lineage4.9 16
lineage2.2.1 9
La1.2.BCG 1
La1.7;M.canetti;lineage4.9 5
La1.7;lineage4.9 9
lineage2.1;lineage4.9;lineage7 1
lineage2.1;lineage2.2;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage2.1;lineage4.9;lineage6.3 2
lineage6.1.1 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La1.7.1 2
lineage4.1.2 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 3
lineage4.9;lineage7 3
La1.6;La3;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1;lineage2;lineage4.9 1
lineage4.9;lineage6.1.3 1
La1.8.1 3
lineage4.3.4.1 3
lineage4.1.3 2
lineage1;lineage4.9 1
La3;lineage4.9 8
lineage4.9;lineage9 2
M.canetti;lineage1 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
lineage4.9;lineage6.3 2
lineage4 3
La2;lineage4.9;lineage9 1
La2;lineage4.9 2
lineage4.2.1 1
lineage2.1;lineage4.9 2
La1.7 2
lineage1.1.1 1
La1;lineage4.1.2 1
M.canetti;lineage4.9 4
M.canetti;lineage2.1 1
lineage4.4.1.2 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage2.1;lineage3 1
lineage4.1.2.1 4
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;lineage4 1
lineage1.1.3.1 1
2
lineage3.1;lineage9 1
La1.7;lineage4.9;lineage6 1
La2;lineage2.2 1
lineage2.2.1;lineage4 1
lineage3 2
lineage1.2.1.1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage3.1.2.2 1
lineage4.5 1
La1;lineage4.9 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.3.2;lineage4.9 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage1.1.1;lineage4 1
lineage2.2 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.1.1.2 1
M.canetti;lineage2.1;lineage4 1
lineage4.3.4.2.1 1
La1.6;La3;M.canetti;lineage4.2.2 1
lineage4.8 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.7;lineage4.9;lineage7 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
lineage4.6.3;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7.1;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage2.1;lineage4.3.2 1
lineage6.1.3 1
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.2.1.1 1
spoligotype Counts
spoligotype Count
None 274
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR3797029 Other lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675441 RR-TB lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR736872 HR-TB lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR369157 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4798099 HR-TB lineage4.9 None
ERR369151 Other lineage4.9 None
ERR9787014 RR-TB lineage6.1.1 None
ERR3797079 Sensitive lineage4.9 None
ERR400320 Sensitive lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR9970980 HR-TB lineage4.1.2 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
ERR926165 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR6866410 HR-TB lineage4.9 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR3675455 Sensitive lineage4.9 None
ERR387051 RR-TB lineage4.9 None
ERR3797061 Other La1.6;La3;lineage4.9 None
ERR926154 Sensitive lineage4.9 None
ERR736848 Other lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SRR6046245 Other lineage4.9 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR3283030 HR-TB lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR14801749 HR-TB lineage4.9 None
ERR3799304 RR-TB lineage6.1.1 None
ERR3797019 Other La1.8.1 None
SRR7236177 Other La1.8.1 None
ERR11465353 Sensitive lineage4.3.4.1 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926158 Sensitive lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
SRR15014655 Other M.canetti;lineage1 None
ERR3283011 Other La3;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046382 RR-TB lineage2.2.1 None
SRR6511621 HR-TB lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR502524 MDR-TB lineage4.9;lineage6.3 None
SRR3675280 RR-TB lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675522 Other lineage4.9 None
ERR926163 Other lineage4.9 None
ERR176779 HR-TB lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR323039 MDR-TB La2;lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR3675387 Other lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR4830353 HR-TB La1.7 None
SRR12416842 HR-TB lineage4.9 None
SRR14066533 RR-TB lineage1.1.1 None
ERR4816656 Other lineage4.9 None
SRR6044876 Sensitive lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
ERR4797313 Sensitive lineage2.2.1 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4797184 HR-TB lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR369156 Sensitive lineage4.9 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
ERR3283040 HR-TB lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR212125 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR7240492 MDR-TB La1.7.1 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR926155 Other lineage4.9 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR9786682 Other lineage4.1.2.1 None
SRR5341456 Other lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR1063896 HR-TB None
ERR9786843 Other None
SRR28351339 MDR-TB lineage4 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR4797474 Other lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR176651 Other lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
ERR11465597 Sensitive lineage4.1.2.1 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR1159378 Other lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR4818929 HR-TB lineage4.9 None
ERR4798504 RR-TB lineage3 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR926156 Other lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR3283031 Other La3;lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
ERR926162 Sensitive lineage4.9 None
SRR3675487 MDR-TB M.canetti;lineage4.9 None
ERR926157 Other lineage4.9 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR9119669 MDR-TB lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR400345 Other lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR926160 Other lineage4.9 None
ERR4811031 Other lineage4.5 None
ERR400326 Other lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR736865 MDR-TB lineage4.3.2;lineage4.9 None
SRR5709967 MDR-TB lineage2.2.1 None
ERR1063858 HR-TB lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
ERR11465232 Sensitive lineage4.1.2.1 None
ERR4812155 Other lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR9786694 Other lineage4.1.2.1 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR502510 HR-TB lineage4.9 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR5341469 HR-TB lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR971389 Other lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045795 Other lineage2.2.1 None
ERR6866807 RR-TB lineage4.9 None
ERR137286 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4818252 HR-TB lineage4.1.1.2 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR11465235 Sensitive lineage4.3.4.2.1 None
ERR702405 HR-TB lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR5162090 RR-TB lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
SRR1172310 MDR-TB lineage4.9 None
ERR4816151 Other lineage4.8 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR1180226 HR-TB lineage4.9 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR181887 Other lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR5341384 HR-TB lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR17832802 HR-TB lineage3 None
SRR16156817 Other lineage4.9 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR6326069 Pre-XDR-TB lineage4.3.4.1 None
SRR3675461 RR-TB lineage4.9 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR124636 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR3675267 Other La1.7;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR3675580 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1183111 HR-TB lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926164 Other lineage4.9 None
SRR6044815 RR-TB lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR3675222 Other La1.7 None
ERR9787153 Other lineage6.1.3 None
SRR6044835 Other lineage4.9 None
ERR5311094 HR-TB lineage4.9 None
ERR3468607 RR-TB lineage4.9 None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR4819422 HR-TB lineage4.9 None
ERR3275196 RR-TB lineage2.2.1 nl
SRR1183106 RR-TB lineage2.2.1.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR161037 HR-TB lineage4.9 None