Rv0668 - c.2640G>C


Drug resistance types
42 Sensitive 37 RR-TB 40 HR-TB 104 MDR-TB 5 Pre-XDR-TB 2 XDR-TB 51 Other
lineage Counts
lineage Count
M.canetti;lineage2.1;lineage4.9 24
lineage4.9 58
La3;M.canetti;lineage2.1;lineage4.9 12
La1.7;lineage4.9 7
lineage3 3
lineage1.1 31
M.canetti;lineage4.9 3
lineage2.2.1 8
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
lineage4.8 4
lineage4 3
lineage4.3.4.1 3
lineage4.3.3 4
La3;M.canetti;lineage4.8;lineage4.9 1
lineage1;lineage4.9 1
M.canetti;lineage1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage4.1.2.1 10
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage4.9;lineage7 1
lineage1.2.1.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.1;lineage6.3 1
lineage4.1.1.3 4
lineage4.9;lineage9 1
lineage2.1;lineage4.9 6
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage2.2.1.1 2
La1.7.1 2
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage5.1.4 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
2
lineage3.1.2.1;lineage4 1
La3;M.canetti;lineage4.9 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.2 3
La1.7;M.canetti;lineage4.9 3
lineage2.1;lineage2.2;lineage6.3 1
lineage2.2 2
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
La1.8.1 2
La1.7;lineage4.9;lineage7 1
lineage4.1;lineage4.8 2
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.1.1.1 1
lineage4.6.2.2 2
lineage4.5 3
lineage2.1;lineage4.1.1.1;lineage6.3 2
La1.7 2
lineage2.1;lineage4.3.2 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 2
lineage4.1.1.3;lineage4.9 2
M.canetti;lineage2.1;lineage3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage1.1.2 1
La3;M.canetti;lineage2.1;lineage3.1 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.2.2.2 1
La1.2;La1.8.1 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.8.1 3
lineage4.9;lineage6.3 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
M.canetti;lineage2.1 1
lineage4.3.4.2.1 1
La3;M.canetti;lineage3.1 1
lineage4.4.1.1.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.9;lineage9 1
lineage1.1.2;lineage4 1
lineage2.2.1.2 1
M.canetti;lineage2.1;lineage4 1
lineage4.4.1.1 1
spoligotype Counts
spoligotype Count
None 281
Geographic prevalence
Country level data for this variant is available for 26 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045217 Other lineage4.9 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675501 Other La1.7;lineage4.9 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4596902 MDR-TB lineage3 None
ERR2693228 RR-TB lineage4.9 None
ERR718374 Sensitive lineage1.1 th
SRR3675487 MDR-TB M.canetti;lineage4.9 None
ERR4799547 HR-TB lineage2.2.1 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR978765 RR-TB lineage4.8 None
ERR6865502 Sensitive lineage4 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR718556 Sensitive lineage1.1 th
ERR11465353 Sensitive lineage4.3.4.1 None
SRR11342636 MDR-TB lineage4.3.3 None
SRR11662694 Other lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR5709857 Sensitive lineage1.1 th
SRR15014655 Other M.canetti;lineage1 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR400326 Other lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
SRR6045371 Other lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR22251676 Sensitive lineage1.1 None
ERR775800 Sensitive lineage1.1 th
SRR6045706 Other lineage4.9 None
SRR12006550 Other lineage1.2.1.2 None
ERR176751 HR-TB lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR718497 Sensitive lineage1.1 th
SRR11342647 MDR-TB lineage4.1.1.3 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
ERR3468607 RR-TB lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5908228 RR-TB lineage4.3.3 None
ERR473323 HR-TB lineage4.9 None
SRR1180172 RR-TB lineage2.2.1 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3275196 RR-TB lineage2.2.1 nl
SRR1183106 RR-TB lineage2.2.1.1 None
SRR1183144 RR-TB lineage2.2.1 None
SRR7240492 MDR-TB La1.7.1 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR2513283 Sensitive lineage5.1.4 None
SRR11662690 HR-TB lineage4.9 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786843 Other None
SRR1640750 RR-TB None
SRR28351455 Other lineage3.1.2.1;lineage4 None
SRR29440660 Sensitive lineage1.1 None
SRR29440609 Sensitive lineage1.1 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR176766 MDR-TB lineage2.1;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR752075 Sensitive lineage1.1 th
SRR3675507 RR-TB lineage4.9 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR718235 Sensitive lineage1.1 th
SRR1183049 RR-TB lineage2.2 None
SRR5535933 Other lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4821053 RR-TB lineage3 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
ERR4817667 HR-TB lineage4.8 None
ERR751875 Sensitive lineage1.1 th
ERR11466044 Other lineage4.1.1.3 None
SRR3675455 Sensitive lineage4.9 None
SRR1791696 RR-TB La1.8.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675269 RR-TB lineage4.9 None
ERR4799025 Other lineage4.8 None
ERR9119669 MDR-TB lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR11342651 MDR-TB lineage4.1.1.1 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9119525 MDR-TB lineage4.6.2.2 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR718262 Sensitive lineage1.1 th
ERR718288 HR-TB lineage1.1 th
ERR4811031 Other lineage4.5 None
ERR400336 Sensitive lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR13861305 Other lineage4.9 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816551 MDR-TB lineage4.1.1.3 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR4799513 HR-TB lineage2.2 None
ERR9786525 RR-TB lineage4.1;lineage4.8 None
ERR2229143 RR-TB lineage4.9 None
SRR12199472 Sensitive lineage1.1 None
ERR4769474 HR-TB lineage4.9 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR4830353 HR-TB La1.7 None
ERR4769444 HR-TB lineage4.9 None
ERR751956 HR-TB lineage1.1 th
SRR6044815 RR-TB lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4797184 HR-TB lineage4.9 None
ERR768001 Sensitive lineage1.1 th
SRR3675494 RR-TB lineage4.9 None
ERR718236 Sensitive lineage1.1 th
ERR4798431 Other lineage4.1;lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR3077978 RR-TB lineage1.1 None
ERR473314 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR5341412 Pre-XDR-TB lineage3 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR9119096 RR-TB lineage4.3.3 None
ERR4769442 Sensitive lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR752229 Other lineage4.5 None
SRR21733183 RR-TB lineage1.1.2 None
ERR6359074 HR-TB lineage4.9 None
SRR3675441 RR-TB lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369157 Sensitive lineage4.9 None
ERR718422 Sensitive lineage1.1 th
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR752159 Sensitive lineage1.1 th
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR5162090 RR-TB lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045832 Other lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR6046141 Other lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR4816151 Other lineage4.8 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6045548 Other lineage4.9 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR751765 Sensitive lineage1.1 th
ERR751915 HR-TB lineage1.1 th
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
ERR1063855 Other lineage4.9 None
ERR400345 Other lineage4.9 None
ERR4798823 HR-TB lineage4 None
SRR6046897 Sensitive lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
SRR11342660 MDR-TB lineage2.2.1 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR768038 Sensitive lineage1.1 th
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR5917710 RR-TB lineage4.1.2.1 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR11342693 MDR-TB lineage4.8.1 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675522 Other lineage4.9 None
SRR3675488 Other La1.7;lineage4.9 None
ERR751929 Sensitive lineage1.1 th
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323037 Other lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4596910 Sensitive lineage4.9 None
ERR736831 Other lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4812155 Other lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR3675229 Sensitive lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR775770 Sensitive lineage1.1 th
SRR1180147 RR-TB lineage2.2.1.1 None
SRR1162864 MDR-TB lineage4.1.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SRR3675222 Other La1.7 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR775779 HR-TB lineage1.1 th
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675243 MDR-TB lineage4.9 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675260 Sensitive lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR736834 HR-TB lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR6045503 Other lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
SRR5709792 Pre-XDR-TB lineage1.1 th
SRR1165584 Other lineage4.1.2.1 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR3675383 Sensitive lineage4.9 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4407532 Sensitive lineage1.1 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR752189 Other lineage1.1 th
ERR278594 MDR-TB lineage2.1;lineage4.9 None
ERR4817692 MDR-TB lineage1.1.2;lineage4 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR11342662 MDR-TB lineage4.8.1 None
SRR3675385 Other La1.7;lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR1175127 Other lineage2.2.1.2 None
ERR751946 Sensitive lineage1.1 th
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR1173453 Other lineage4.4.1.1 None
ERR775792 Sensitive lineage1.1 th
ERR369151 Other lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR11465604 HR-TB lineage4.8.1 None