lineage | Count |
---|---|
96 | |
lineage4.8 | 6 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
lineage2.2.1 | 11 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage2.1 | 2 |
lineage4.9 | 17 |
lineage1.2.1.1 | 1 |
lineage4.1.2.1 | 12 |
lineage4 | 52 |
lineage4.3 | 1 |
lineage2.2 | 4 |
lineage4.4.1.1 | 1 |
La1.8.1 | 1 |
lineage4.1;lineage1 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.2 | 2 |
lineage4.1.1.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 2 |
lineage4.2.1 | 1 |
lineage1.1.2 | 2 |
lineage5.2 | 2 |
La1 | 2 |
lineage4.1.3 | 2 |
lineage5.1.2 | 1 |
lineage2 | 3 |
lineage3 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.4 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.2 | 1 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
La3 | 1 |
lineage4.3.3 | 1 |
lineage3.1 | 2 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 243 |
ID | Drug resistance | Lineage | Country iso2 | ERR176779 | HR-TB | None | SRR24035883 | HR-TB | lineage4.8 | None | ERR10112887 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | SRR24035884 | HR-TB | lineage4.8 | None | SRR24035885 | HR-TB | lineage4.8 | None | ERR176793 | Other | lineage4.1.1 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR176643 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675221 | HR-TB | None | SRR3675265 | Other | lineage4 | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675311 | Other | None | SRR3675292 | Sensitive | lineage4 | None | ERR176751 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675527 | RR-TB | lineage4.9 | None | ERR4816999 | Other | None | SRR3675572 | Other | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | ERR212033 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | ERR4816466 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | ERR4817263 | Sensitive | lineage4.9 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514692 | Other | None | ERR4818615 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341333 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046863 | Sensitive | lineage1.1.2 | None | SRR6046802 | Other | lineage4 | None | SRR6981961 | Sensitive | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6789626 | Other | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7496523 | Other | lineage4.7 | None | ERR323043 | HR-TB | None | SRR7535086 | Other | None | ERR323045 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445503 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR349264 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797071 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4798431 | HR-TB | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR4178226 | Sensitive | lineage4 | None | ERR5336148 | Other | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR387051 | HR-TB | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR4407463 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736874 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR702406 | HR-TB | None | ERR6358979 | Other | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR10808399 | Sensitive | lineage4 | None | SRR1172728 | MDR-TB | None | SRR10808805 | Sensitive | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1175090 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1175074 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184372 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR12142341 | HR-TB | None | SRR14801749 | Sensitive | None | SRR15368973 | Other | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR19304036 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None |
---|