Rv0486 - c.409C>T
Drug resistance types
48 Sensitive
4 RR-TB
46 HR-TB
8 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
118 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 83 |
| lineage2.2 | 1 |
| lineage1.2.1.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| 18 | |
| M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 15 |
| lineage4 | 3 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.9 | 3 |
| lineage2.2.1 | 9 |
| lineage4.1.1.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.3.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.8 | 6 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage5.2 | 2 |
| lineage2.1 | 5 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| La1.2.BCG | 1 |
| lineage4.1.2.1 | 9 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage6.1.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage4.8 | 1 |
| lineage4.3.4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.2;La1.8.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3 | 2 |
| lineage1.1.3.1 | 1 |
| La1;lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 230 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR363490 | Sensitive | lineage4.9 | None | ERR4816585 | Other | lineage2.2 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4.9 | None | SRR29096710 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR363437 | Sensitive | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR363449 | Sensitive | lineage4.9 | None | ERR363474 | Sensitive | lineage4.9 | None | SRR29096394 | Sensitive | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR3675280 | RR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR6045371 | Other | lineage4.9 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR29096873 | Sensitive | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR702406 | Other | lineage2.1 | None | ERR363502 | Other | lineage4.9 | None | ERR9117709 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR24035885 | HR-TB | lineage4.8 | None | SRR1172234 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR176751 | Other | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR363447 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR373947 | Other | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR373946 | Sensitive | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR502912 | Other | lineage2.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR363456 | Sensitive | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR2514692 | Other | None | SRR1172857 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR369159 | Sensitive | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1184372 | MDR-TB | None | SRR24035883 | HR-TB | lineage4.8 | None | ERR9786604 | Other | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR6045503 | Sensitive | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR18213713 | HR-TB | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR29096882 | Sensitive | lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | ERR369158 | Other | lineage4.9 | None | ERR363498 | Sensitive | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4819932 | Other | lineage4.7 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR24035884 | HR-TB | lineage4.8 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR6046897 | Sensitive | lineage4.9 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4816999 | Other | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675248 | Other | lineage4.9 | None | ERR349299 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675236 | Other | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR349298 | Sensitive | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR7535086 | Other | None | ERR4800341 | Other | lineage3 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR6045706 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR3675311 | Other | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3675221 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | ERR234659 | Other | None | ERR181824 | HR-TB | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR1173633 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176651 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR369162 | Other | lineage4.9 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR28351347 | Other | lineage3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR369163 | Sensitive | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR3675214 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR6358979 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR13285068 | Sensitive | lineage4.9 | None | SRR29096935 | Sensitive | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None |
|---|
