lineage | Count |
---|---|
85 | |
lineage2.2.1 | 9 |
lineage4 | 15 |
lineage5.2 | 2 |
lineage4.6.2.2 | 4 |
lineage2.2 | 5 |
lineage4.1.2.1 | 2 |
lineage4.1.1.3 | 1 |
lineage2 | 3 |
La1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage6.1.3 | 1 |
lineage4.8;lineage4.1 | 2 |
La3 | 1 |
lineage4.4.1.1 | 1 |
lineage4.9 | 10 |
lineage4.3.3 | 4 |
lineage2.2.1.1 | 3 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage1.1.1 | 1 |
lineage2.1 | 2 |
lineage4.9;La3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1.1 | 1 |
lineage4.3.4 | 1 |
lineage4.3 | 1 |
lineage4.8 | 2 |
lineage4.8;La3 | 1 |
lineage4.2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 167 |
ID | Drug resistance | Lineage | Country iso2 | ERR294266 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6479536 | Other | lineage4 | None | SRR6511621 | HR-TB | None | SRR6789626 | Other | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR7535082 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | ERR3283024 | Other | None | ERR1035122 | Sensitive | None | ERR3445501 | HR-TB | None | ERR3283032 | HR-TB | None | ERR4407463 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769450 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358991 | HR-TB | None | ERR6336691 | Other | lineage1.2.1.2.1 | None | ERR702404 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | SRR1169194 | Other | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR1167384 | Other | lineage4 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | SRR1169249 | Other | La3 | None | SRR1172817 | HR-TB | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196546 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1196768 | MDR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR15368973 | Other | None | SRR19304036 | HR-TB | None | SRR1710057 | Other | lineage2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675270 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675234 | Other | None | ERR181744 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | ERR176643 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675510 | Other | None | ERR2027263 | Other | lineage4 | None | ERR212001 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR4817060 | RR-TB | None | ERR212123 | Other | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4818394 | Other | lineage4.9 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4816656 | HR-TB | None | ERR4817735 | Other | lineage4.8 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818929 | HR-TB | None | SRR5341302 | HR-TB | None | ERR2693231 | Other | None | SRR6045526 | HR-TB | None | ERR2693257 | Other | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6046152 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045327 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046385 | Other | lineage4.9 | None | SRR6046225 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046397 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None |
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