Rv2754c - c.204A>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
10 Sensitive
2 RR-TB
27 HR-TB
7 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
38 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.7;lineage4.9 | 9 |
| lineage4.9 | 33 |
| La3;lineage4.9 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.7 | 1 |
| lineage4.8 | 2 |
| lineage2.2.1 | 5 |
| 2 | |
| La1.6;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| La2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage6.1.3 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 2 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.2 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 84 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR4816151 | Sensitive | lineage4.8 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR212001 | HR-TB | None | SRR10808730 | Other | lineage4.9 | None | SRR28351554 | Sensitive | La1.6;lineage4 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | ERR9787153 | Other | lineage6.1.3 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR26331611 | Sensitive | lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3509850 | MDR-TB | lineage4.3.4.2.1 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR3797029 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR212138 | HR-TB | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None |
|---|
