Rv0668 - c.3201T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
35 Sensitive
6 RR-TB
14 HR-TB
7 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
24 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 29 |
| lineage2.2.1.1 | 4 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage7 | 3 |
| lineage4.3.4.1 | 2 |
| lineage2.2.1 | 9 |
| lineage3;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4 | 1 |
| M.canetti;lineage1 | 1 |
| 1 | |
| lineage5.1.4 | 1 |
| La3;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.4.1.1 | 2 |
| La1.7;lineage4.9 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage3 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.7 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 89 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR8217918 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675441 | Other | lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | ERR4816151 | Sensitive | lineage4.8 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675284 | Sensitive | lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR7496471 | Sensitive | lineage4 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR400345 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR13266684 | Pre-XDR-TB | lineage2.2.1 | None | SRR15014682 | MDR-TB | lineage4.8 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR29126204 | Sensitive | lineage4.4.1.1 | None | SRR3675280 | RR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR387051 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR1175508 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None |
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