lineage | Count |
---|---|
107 | |
lineage2 | 2 |
lineage1.1.1 | 1 |
La1.7.1 | 1 |
lineage4.5 | 2 |
lineage7;lineage2.2.1.2 | 1 |
lineage2.2.1 | 11 |
lineage2.2 | 8 |
lineage4.9 | 20 |
lineage4.8 | 3 |
lineage4.9;La3 | 1 |
lineage4.2;La1.7 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.3 | 1 |
lineage4 | 13 |
lineage4.1 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.1.2.1 | 2 |
lineage3 | 3 |
lineage5.2 | 2 |
lineage4.7 | 1 |
lineage4.4.1.2 | 1 |
lineage4.6.1.1 | 3 |
La1.2 | 1 |
lineage4;lineage3.1 | 1 |
La1 | 1 |
lineage6.3.1 | 1 |
La3 | 1 |
lineage2.2.1.2 | 2 |
lineage2.2.1.1 | 2 |
lineage3.1 | 2 |
lineage4.3.3 | 1 |
spoligotype | Count |
---|---|
None | 200 |
ID | Drug resistance | Lineage | Country iso2 | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR14782405 | HR-TB | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR15368973 | Other | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19303884 | HR-TB | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19304036 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR21673294 | Other | lineage4.8 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR176779 | HR-TB | None | SRR3675465 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR181887 | HR-TB | None | SRR3675311 | Other | None | ERR4816585 | Other | lineage2.2 | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675574 | HR-TB | None | SRR3675571 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818615 | Other | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341456 | Other | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR6045555 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045450 | Other | lineage4.9 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693231 | Other | None | ERR4821276 | Other | lineage3 | None | SRR6045217 | Other | lineage4 | None | SRR6044790 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045053 | Other | None | SRR6046133 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046046 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046492 | Other | None | SRR6045327 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046397 | Other | None | SRR6046540 | HR-TB | None | ERR4831117 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | ERR323037 | HR-TB | lineage4 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR502532 | HR-TB | None | SRR6789626 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | ERR323108 | HR-TB | lineage4 | None | SRR7535086 | Other | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323043 | HR-TB | None | ERR323045 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR3283036 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR5336148 | Other | None | ERR3283055 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3797044 | Other | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797017 | Other | None | ERR3797046 | HR-TB | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR405209 | Sensitive | lineage4 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR4769497 | HR-TB | La1.2 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798262 | HR-TB | La1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR702406 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR990545 | Other | lineage3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9117709 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786843 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1167384 | Other | lineage4 | None | SRR1140586 | HR-TB | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1173778 | Other | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None |
---|