lineage | Count |
---|---|
lineage4.8 | 3 |
lineage4.9 | 29 |
99 | |
lineage4 | 24 |
lineage3 | 1 |
lineage1.1 | 1 |
lineage4.1.2.1 | 7 |
lineage2.2.1 | 9 |
lineage3.1 | 2 |
lineage5.2 | 2 |
lineage4.2.1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
lineage2.2 | 1 |
La1 | 2 |
La1.8.1 | 1 |
lineage4.3.4 | 1 |
lineage4.3.4.2 | 1 |
lineage2.2.1.1 | 3 |
lineage4.3.2 | 1 |
lineage6.1.3 | 1 |
lineage4.1 | 1 |
lineage4.2.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 197 |
ID | Drug resistance | Lineage | Country iso2 | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819357 | Other | lineage4.9 | None | SRR5341418 | Other | None | ERR1035138 | MDR-TB | None | SRR5341299 | Sensitive | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693231 | Other | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR278594 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR2693227 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR4829260 | Sensitive | lineage4.1.2.1 | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR323038 | HR-TB | None | ERR323036 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131027 | Sensitive | lineage4.1.2.1 | None | ERR323041 | HR-TB | None | SRR8217918 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034652 | Other | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063859 | HR-TB | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR1063857 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3439432 | Other | None | ERR3797015 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797061 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR387051 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR4024991 | Other | None | ERR4797474 | Other | None | ERR403298 | HR-TB | lineage4 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797264 | Sensitive | None | ERR4188350 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4797184 | Sensitive | lineage4 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR736872 | Sensitive | lineage4 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6359069 | Other | lineage4.9 | None | ERR6866639 | Other | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6866022 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9119669 | HR-TB | None | ERR9787153 | Other | lineage6.1.3 | None | SRR6325445 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675246 | Sensitive | lineage4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR4816964 | Other | lineage4.9 | None | ERR176651 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212123 | Other | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR1035162 | Other | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341453 | Sensitive | None |
---|