Rv0006 - c.1896G>C


Drug resistance types
8 Sensitive 3 RR-TB 57 HR-TB 16 MDR-TB 1 Pre-XDR-TB 2 XDR-TB 61 Other
lineage Counts
lineage Count
lineage3 1
2
lineage4.9 47
La1;lineage4.9 1
lineage4.2;lineage4.9 2
M.canetti;lineage2.2 2
lineage4.9;lineage6.3 2
M.canetti;lineage4.9;lineage9 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
M.canetti;lineage2.2.2;lineage6.2 2
La1.7.X-unk4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
La1.7;lineage4.9 3
La3;lineage4.9 11
lineage1;lineage4.9 1
La1.7;M.canetti;lineage4.9 2
lineage4.6.2.2 2
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage4.9;lineage9 3
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage2.2.1 3
M.canetti;lineage4.9 2
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.3.2;lineage4.9 1
lineage1.2.1.2 1
lineage3.1.2.1;lineage4 1
lineage2.1;lineage4.9;lineage6.3 2
lineage2.2.1.2;lineage7 1
lineage6.1.1 2
lineage4.3.4 1
La1.7.1 1
lineage2.2 3
lineage4.8.1 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;lineage4.9 1
La1.2;La1.8.1 1
lineage3.1.2.2 1
M.canetti;lineage1 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La2;lineage4.9;lineage9 1
lineage4.3.4.1 1
lineage4.9;lineage7 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.2.1.1 3
M.canetti;lineage4.2 1
lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
M.canetti;lineage4.2;lineage4.9 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
lineage4.8 2
lineage3.1.2.1;lineage3.1.2.2 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9 1
La2;lineage4.9 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
lineage4.2;lineage4.8.1;lineage4.9 2
lineage4.1.2.1 1
La1.7;lineage4.2 1
spoligotype Counts
spoligotype Count
None 148
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5341412 Pre-XDR-TB lineage3 None
ERR987722 MDR-TB None
SRR10808730 Other lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR502524 HR-TB lineage4.9;lineage6.3 None
SRR29096410 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
SRR3675270 Other lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR5311079 Other La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6046046 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR6045548 Sensitive lineage4.9 None
ERR3283014 Sensitive La3;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6046593 Other lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
SRR6044942 HR-TB lineage4.9 None
SRR29096150 Other lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4816478 HR-TB lineage4 None
ERR3797064 Other La3;lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
ERR3797046 HR-TB lineage4.9 None
SRR3675234 Other La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR1183144 Other lineage2.2.1 None
ERR3283018 HR-TB lineage4.9 None
SRR6045233 Other M.canetti;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR736875 HR-TB lineage4.9 None
ERR736865 HR-TB lineage4.3.2;lineage4.9 None
SRR12006550 Sensitive lineage1.2.1.2 None
SRR1167384 Other La3;lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR28351455 Other lineage3.1.2.1;lineage4 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR9787014 Other lineage6.1.1 None
ERR736817 HR-TB lineage4.3.4 None
SRR1792478 HR-TB La1.7.1 None
SRR20969708 HR-TB lineage2.2 None
ERR3797048 Other La3;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR11465604 HR-TB lineage4.8.1 None
SRR20969731 Other lineage2.2.1 None
ERR2693231 Other La1.6;La3;lineage4.6.4;lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR5341330 Other lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR26399490 Sensitive lineage4.9 None
SRR7240033 Other La1.2;La1.8.1 None
ERR3797063 Sensitive La3;lineage4.9 None
ERR4798648 MDR-TB lineage3.1.2.2 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR15014655 Other M.canetti;lineage1 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR323053 MDR-TB La2;lineage4.9;lineage9 None
ERR4816466 HR-TB lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
ERR4816656 Other lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
SRR1180172 Other lineage2.2.1 None
ERR176751 Other lineage4.9 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR212125 HR-TB lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR3797014 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9786843 Other None
SRR26159047 Other lineage4.6.3;lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR1180226 HR-TB lineage4.9 None
SRR6046878 Other lineage4.9 None
ERR133986 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR3283042 Other lineage4.9 None
ERR4819241 Other lineage4.9 None
SRR29097026 Other lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
SRR1172310 HR-TB lineage4.9 None
ERR2693257 Other La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
ERR987729 HR-TB lineage3.1.2.1;lineage3.1.2.2 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6046210 Other lineage4.9 None
SRR6045053 Other lineage4 None
ERR323039 HR-TB La2;lineage4.9 None
ERR4799025 Other lineage4.8 None
ERR181887 Other lineage4.9 None
SRR1174897 MDR-TB lineage4.9;lineage9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4769450 Other lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR5341470 MDR-TB lineage4.9;lineage9 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR1063862 HR-TB lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR4817731 HR-TB lineage4.9 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4769452 Other lineage4.9 None
ERR3799304 Other lineage6.1.1 None
ERR4799513 HR-TB lineage2.2 None
SRR1184024 RR-TB lineage2.2.1.1 None
SRR1183111 HR-TB lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR779852 Sensitive lineage4.9 None
SRR23961559 Other La1.7;lineage4.2 None
ERR6359082 Other lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
SRR20970016 Other lineage2.2 None