lineage | Count |
---|---|
lineage7;lineage2.2.1.2 | 1 |
La1.7.1 | 1 |
84 | |
lineage2.2.1 | 7 |
lineage2.2 | 6 |
lineage4.9 | 6 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4 | 21 |
lineage4.3 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage3 | 1 |
lineage4.8 | 1 |
lineage4.1 | 1 |
lineage4.6.2.2 | 2 |
lineage4.8.1 | 1 |
La2 | 1 |
lineage6.1.1 | 2 |
La1.2 | 2 |
lineage3.1.2 | 1 |
lineage4.3.4 | 1 |
La3 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.1.2 | 1 |
lineage2.2.1.1 | 3 |
lineage1.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
spoligotype | Count |
---|---|
None | 152 |
ID | Drug resistance | Lineage | Country iso2 | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR14782405 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | ERR181887 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675502 | Other | None | ERR158583 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675234 | Other | None | SRR3675265 | Other | lineage4 | None | ERR176651 | HR-TB | None | ERR176643 | HR-TB | None | ERR176740 | HR-TB | None | ERR176751 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675550 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR212034 | HR-TB | None | ERR4816656 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4818929 | HR-TB | None | ERR4819462 | Other | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341313 | HR-TB | None | SRR5341418 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341432 | HR-TB | lineage4 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2693231 | Other | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2693230 | Other | None | ERR2693257 | Other | None | ERR2693254 | Other | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046210 | Other | lineage4 | None | SRR6045399 | Other | None | SRR6046046 | Other | None | SRR6046460 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6046644 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR323039 | HR-TB | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR294266 | HR-TB | None | ERR502889 | Other | None | SRR8217918 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR323108 | HR-TB | lineage4 | None | ERR323053 | HR-TB | None | ERR323045 | HR-TB | None | ERR3283014 | HR-TB | None | ERR067681 | HR-TB | None | ERR1063859 | HR-TB | None | ERR133986 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797017 | Other | None | ERR3797046 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3797014 | Other | None | ERR3797043 | HR-TB | None | ERR4769452 | HR-TB | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797087 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769450 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR6198317 | Other | La1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736865 | HR-TB | None | ERR6866410 | Sensitive | None | ERR702404 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR6865502 | Sensitive | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786843 | Other | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None |
---|