Rv3696c - c.1155G>C
Drug resistance types
62 Sensitive
5 RR-TB
41 HR-TB
8 MDR-TB
4 Pre-XDR-TB
2 XDR-TB
109 Other
lineage Counts
| lineage | Count |
|---|---|
| 12 | |
| lineage4.8 | 2 |
| lineage4.3.3 | 1 |
| lineage4.9 | 94 |
| lineage6.3.1 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.2.1 | 11 |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.2 | 3 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.1.2.1 | 8 |
| La1.8.1 | 1 |
| lineage3 | 4 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 7 |
| lineage2.2.2 | 1 |
| lineage2.1;lineage4.9 | 8 |
| lineage4.4.1.1 | 2 |
| La3;lineage4.9 | 3 |
| La1;lineage4.9 | 1 |
| lineage4.1.1.1 | 2 |
| La1;lineage4.1.2 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage5.1.4 | 1 |
| lineage2.1 | 3 |
| lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La3;lineage1.1.2 | 1 |
| lineage4.1.2 | 2 |
| lineage4 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.9;lineage6.3 | 4 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.3 | 2 |
| lineage5.2 | 2 |
| La3 | 1 |
| M.canetti;lineage4.9 | 3 |
| La3;lineage2.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.1;lineage4.8 | 1 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage1.2.1.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.5 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.9.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.7;lineage4.9 | 1 |
| lineage1.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 231 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18213713 | HR-TB | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR1175496 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR369158 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1791747 | Other | La1.8.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046046 | Other | lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR9896144 | Other | lineage3 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | ERR363506 | Sensitive | lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR373945 | Sensitive | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR26159043 | Other | lineage4.9 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR363449 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675236 | Other | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR25827682 | Other | None | ERR369159 | Sensitive | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR363453 | Sensitive | lineage4.9 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR363498 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR6045053 | Other | lineage4 | None | ERR6358979 | Other | lineage4.9 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363479 | Sensitive | lineage4.9 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR2446566 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR363426 | Sensitive | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4816999 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR400326 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR6045371 | Other | lineage4.9 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR11465015 | Sensitive | lineage4.3.4.2.1 | None | ERR990545 | Other | lineage3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4800341 | Other | lineage3 | None | SRR3675387 | Other | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR4812155 | Other | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1173400 | Other | lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR363447 | Other | lineage4.9 | None | SRR28868888 | Other | lineage1.1.3.2 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR6045706 | Sensitive | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR373946 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR20970016 | Other | lineage2.2 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR28119752 | Other | lineage4.9 | None | ERR349264 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6046878 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR29096203 | Sensitive | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR752229 | Other | lineage4.5 | None | ERR323066 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR369162 | Other | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR369163 | Sensitive | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR349299 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | ERR363499 | Sensitive | lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363502 | Other | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR12708416 | Sensitive | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR1184381 | MDR-TB | None | SRR3675221 | Other | lineage4.9 | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR363446 | Sensitive | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR363500 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3675270 | Other | lineage4.9 | None |
|---|
