Rv3696c - c.1182G>C
Drug resistance types
4 Sensitive
11 RR-TB
72 HR-TB
21 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
108 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9 | 67 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La1.7;lineage4.9 | 8 |
| La1.7.1;lineage4.9 | 1 |
| lineage4 | 3 |
| M.canetti;lineage4.9 | 2 |
| La1.7 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La1.8.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.1;lineage4.9 | 11 |
| La3;lineage4.9 | 4 |
| lineage4.1.2 | 1 |
| lineage4.2;lineage4.9 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage6.1.3 | 1 |
| lineage3 | 2 |
| lineage4.1.2.1 | 8 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| 10 | |
| lineage4.9;lineage6.3 | 3 |
| La1.7;M.canetti;lineage4.9 | 3 |
| lineage2.2 | 2 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| La3;lineage1.1.2 | 1 |
| lineage2.2.1 | 6 |
| lineage4.8 | 4 |
| lineage2.1 | 3 |
| lineage4.9;lineage7 | 3 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La3 | 1 |
| La3;lineage2 | 1 |
| La1;lineage4.1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| La3;lineage2.1;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.1.3 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| lineage4.3.4.1 | 1 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 221 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675571 | MDR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4830353 | HR-TB | La1.7 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283010 | Sensitive | La1.8.1 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4828872 | RR-TB | lineage4.2;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR3283021 | MDR-TB | lineage4.9 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR234659 | HR-TB | None | SRR25827682 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4810624 | MDR-TB | lineage2.2 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR3675270 | Other | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR702406 | Other | lineage2.1 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6045555 | Other | lineage4.9 | None | SRR6045548 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046593 | Other | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR6046397 | RR-TB | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR3797070 | Other | lineage4.9 | None | ERR323107 | HR-TB | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3283042 | HR-TB | lineage4.9 | None | SRR19295647 | HR-TB | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR10808730 | Other | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR6046594 | Other | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR9786671 | Other | None | ERR9786604 | Other | None | SRR18213713 | HR-TB | None | SRR3675236 | Other | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4800341 | HR-TB | lineage3 | None | SRR5341330 | Other | lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | SRR6045010 | Sensitive | lineage4.9 | None | SRR13423649 | Other | lineage2.2.1 | None | SRR6046046 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR2693252 | HR-TB | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046878 | Other | lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR9119669 | MDR-TB | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675234 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR3283032 | Other | lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | SRR7496472 | Other | lineage4.9 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR2693257 | HR-TB | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR3797086 | Sensitive | lineage4.9 | None | SRR3675222 | Other | La1.7 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR2229542 | Other | lineage4.8 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR108125 | RR-TB | lineage4.9 | None | SRR6789626 | Other | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR28351554 | Other | La1.6;lineage4 | None | ERR4407463 | HR-TB | None | ERR9787197 | Other | None | ERR752229 | Other | lineage4.5 | None | ERR6358979 | HR-TB | lineage4.9 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | ERR2693231 | HR-TB | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR3283024 | HR-TB | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR3797014 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR26399490 | Sensitive | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR11465801 | Other | lineage4.3.4.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None |
|---|
