lineage | Count |
---|---|
lineage1.1.2 | 8 |
lineage4.9 | 16 |
lineage4 | 144 |
La1.7;lineage4.9 | 2 |
M.canetti;lineage2.2 | 2 |
lineage4.3.4.2.1 | 2 |
lineage4.3.4.2 | 1 |
lineage2.2.1.2;lineage7 | 1 |
lineage2.2.1 | 2 |
lineage4.1.2.1 | 1 |
lineage2.2.1;lineage4 | 1 |
1 | |
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
lineage4.8 | 1 |
M.canetti;lineage2.2.2;lineage6.2 | 2 |
lineage4.6.3;lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 186 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
SRR1172881 | Sensitive | lineage1.1.2 | None |
SRR29096685 | Sensitive | lineage4.9 | None |
ERR2516521 | MDR-TB | lineage4 | nl |
ERR4457875 | Other | lineage4 | None |
ERR2516458 | MDR-TB | lineage4 | pe |
ERR13260439 | XDR-TB | lineage4 | None |
ERR12117926 | MDR-TB | lineage4 | None |
SRR28393954 | MDR-TB | lineage4 | None |
ERR12117965 | MDR-TB | lineage4 | None |
SRR3675246 | Other | lineage4.9 | None |
ERR7339052 | MDR-TB | lineage4 | None |
ERR4025041 | MDR-TB | lineage4 | None |
SRR28394232 | MDR-TB | lineage4 | None |
ERR1034737 | MDR-TB | lineage4 | pe |
SRR29772530 | MDR-TB | lineage1.1.2 | None |
ERR2516414 | MDR-TB | lineage4 | pe |
ERR4813306 | MDR-TB | lineage4 | pe |
ERR4553822 | MDR-TB | lineage1.1.2 | None |
ERR7910889 | MDR-TB | lineage4 | None |
ERR3287791 | MDR-TB | lineage4 | pe |
ERR9029870 | MDR-TB | lineage4 | None |
ERR13260151 | MDR-TB | lineage4 | None |
SRR29094378 | HR-TB | lineage4 | None |
ERR4812883 | MDR-TB | lineage4.9 | pe |
ERR2516541 | Pre-XDR-TB | lineage4 | pe |
ERR176560 | HR-TB | La1.7;lineage4.9 | None |
SRR28393265 | MDR-TB | lineage4 | None |
SRR28394268 | MDR-TB | lineage4 | None |
SRR28394070 | Pre-XDR-TB | lineage4 | None |
SRR28393551 | Pre-XDR-TB | lineage4 | None |
ERR751620 | Pre-XDR-TB | lineage4 | pe |
ERR775307 | HR-TB | lineage4 | pe |
ERR779883 | MDR-TB | lineage4 | pe |
ERR751478 | MDR-TB | lineage4 | pe |
ERR779923 | MDR-TB | lineage4 | pe |
ERR751465 | MDR-TB | lineage4 | pe |
ERR751531 | MDR-TB | lineage4 | pe |
ERR751526 | MDR-TB | lineage4 | pe |
ERR751452 | Pre-XDR-TB | lineage4 | pe |
SRR17234892 | MDR-TB | lineage4 | None |
ERR4457792 | HR-TB | lineage4 | None |
ERR9029867 | Pre-XDR-TB | lineage4 | None |
SRR28393624 | MDR-TB | lineage4 | None |
ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None |
ERR2516548 | MDR-TB | lineage4 | pe |
ERR2516650 | Pre-XDR-TB | lineage4 | pe |
SRR13870364 | Pre-XDR-TB | lineage4 | None |
ERR4813115 | MDR-TB | lineage4 | None |
ERR161034 | HR-TB | lineage4.3.4.2.1 | None |
SAMEA5569642 | Pre-XDR-TB | lineage4 | None |
ERR702405 | Sensitive | lineage4.9 | None |
SRR29096195 | Sensitive | lineage4.9 | None |
ERR13260594 | MDR-TB | lineage4 | None |
ERR3287555 | MDR-TB | lineage4 | None |
ERR4024541 | HR-TB | lineage4 | None |
ERR13265833 | Other | lineage4.9 | None |
ERR751326 | Other | lineage4.9 | None |
SRR28393997 | Pre-XDR-TB | lineage4.3.4.2 | None |
ERR13260344 | MDR-TB | lineage4 | None |
ERR4457843 | MDR-TB | lineage4 | None |
ERR245794 | HR-TB | lineage4.3.4.2.1 | None |
SRR29096225 | Sensitive | lineage4.9 | None |
SRR28393801 | MDR-TB | lineage4 | None |
ERR7339051 | MDR-TB | lineage4 | None |
ERR4812772 | MDR-TB | lineage4 | pe |
ERR4457819 | HR-TB | lineage4 | None |
ERR4457811 | MDR-TB | lineage4 | None |
ERR473332 | Other | lineage4.9 | None |
ERR4831007 | Pre-XDR-TB | lineage1.1.2 | np |
ERR4024944 | MDR-TB | lineage4 | None |
ERR13261617 | MDR-TB | lineage4 | None |
ERR13260301 | MDR-TB | lineage4 | None |
SRR28393626 | MDR-TB | lineage4 | None |
ERR751411 | MDR-TB | lineage4 | pe |
ERR751356 | MDR-TB | lineage4 | pe |
SRR28393423 | MDR-TB | lineage4 | None |
SRR28393306 | MDR-TB | lineage4 | None |
ERR751521 | MDR-TB | lineage4 | pe |
ERR2516667 | MDR-TB | lineage4 | pe |
ERR3287473 | HR-TB | lineage4 | pe |
ERR3287846 | Pre-XDR-TB | lineage4 | pe |
SRR28393529 | MDR-TB | lineage4 | None |
SRR28394278 | MDR-TB | lineage4 | None |
ERR1034756 | HR-TB | lineage4 | pe |
ERR212034 | HR-TB | La1.7;lineage4.9 | None |
ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None |
ERR4457776 | MDR-TB | lineage4 | None |
SRR28393369 | MDR-TB | lineage4 | None |
ERR3287443 | MDR-TB | lineage4 | pe |
SRR28393599 | MDR-TB | lineage4 | None |
SRR28393378 | MDR-TB | lineage4 | None |
SRR28393689 | MDR-TB | lineage4 | None |
SAMEA5569750 | MDR-TB | lineage4 | None |
SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None |
ERR4025071 | MDR-TB | lineage4 | None |
SAMEA5569751 | MDR-TB | lineage4 | None |
ERR13284322 | MDR-TB | lineage4 | None |
SRR12142339 | HR-TB | lineage2.2.1 | None |
ERR4811935 | HR-TB | lineage4 | pe |
ERR2516509 | MDR-TB | lineage4 | pe |
ERR4813495 | HR-TB | lineage4 | None |
ERR502511 | Sensitive | lineage4.9 | None |
SRR28393848 | MDR-TB | lineage4 | None |
ERR11082091 | MDR-TB | lineage4 | None |
SRR28394190 | MDR-TB | lineage4 | None |
ERR4457925 | MDR-TB | lineage4 | None |
ERR3287744 | HR-TB | lineage4 | pe |
ERR4457924 | MDR-TB | lineage4 | None |
ERR4813333 | MDR-TB | lineage4 | None |
ERR3287527 | MDR-TB | lineage4 | None |
ERR4813465 | HR-TB | lineage4 | pe |
ERR4798099 | Other | lineage4.9 | None |
SRR15217980 | HR-TB | lineage4 | None |
ERR502510 | Sensitive | lineage4.9 | None |
SAMN02599138 | Sensitive | lineage1.1.2 | in |
SRR29096194 | Sensitive | lineage4.9 | None |
ERR3287721 | MDR-TB | lineage4 | pe |
ERR13260541 | MDR-TB | lineage4 | None |
ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13260390 | MDR-TB | lineage4.1.2.1 | None |
ERR3287445 | MDR-TB | lineage4 | pe |
ERR7910890 | MDR-TB | lineage4 | None |
SRR6511621 | Sensitive | lineage4.9 | None |
SRR29096527 | Sensitive | lineage4.9 | None |
ERR3287449 | Pre-XDR-TB | lineage4 | None |
ERR3287696 | MDR-TB | lineage4 | pe |
SRR29017110 | MDR-TB | lineage1.1.2 | None |
ERR3287360 | MDR-TB | lineage4 | pe |
SRR29772630 | MDR-TB | lineage1.1.2 | None |
SRR1175036 | Sensitive | lineage1.1.2 | None |
SRR28858605 | MDR-TB | lineage4 | None |
SRR28394044 | MDR-TB | lineage4 | None |
SRR28393572 | MDR-TB | lineage4 | None |
ERR12118009 | MDR-TB | lineage4 | None |
ERR2516472 | MDR-TB | lineage4 | pe |
SRR28394078 | MDR-TB | lineage4 | None |
ERR4457861 | MDR-TB | lineage4 | None |
SRR28393901 | MDR-TB | lineage4 | None |
SRR28393361 | MDR-TB | lineage4 | None |
SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None |
SRR28393349 | MDR-TB | lineage4 | None |
SRR28393600 | Pre-XDR-TB | lineage4 | None |
ERR212001 | HR-TB | None | |
SRR28394271 | Pre-XDR-TB | lineage4 | None |
ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None |
ERR3287735 | MDR-TB | lineage4 | pe |
ERR751447 | MDR-TB | lineage4 | pe |
ERR775321 | MDR-TB | lineage4 | pe |
ERR775319 | HR-TB | lineage4 | pe |
ERR751540 | MDR-TB | lineage4 | pe |
ERR751488 | MDR-TB | lineage4 | pe |
ERR775364 | MDR-TB | lineage4 | pe |
ERR4797474 | Sensitive | lineage4.9 | None |
ERR4812485 | Pre-XDR-TB | lineage4 | pe |
ERR13261893 | MDR-TB | lineage4 | None |
ERR4178287 | MDR-TB | lineage4 | None |
ERR4813603 | MDR-TB | lineage4 | None |
ERR1034755 | MDR-TB | lineage4 | pe |
ERR2516678 | MDR-TB | lineage4 | pe |
ERR3287597 | MDR-TB | lineage4 | pe |
ERR2516503 | Pre-XDR-TB | lineage4 | pe |
ERR2514327 | HR-TB | lineage4.8 | None |
SRR28393318 | MDR-TB | lineage4 | None |
ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None |
ERR2510175 | MDR-TB | lineage4 | pe |
SRR28394269 | MDR-TB | lineage4 | None |
SRR28394260 | MDR-TB | lineage4 | None |
SRR1163300 | MDR-TB | lineage4 | None |
ERR751414 | MDR-TB | lineage4 | None |
ERR4812060 | HR-TB | lineage4 | pe |
SRR6046577 | Other | lineage4.6.3;lineage4.9 | None |
ERR3287864 | MDR-TB | lineage4 | pe |
ERR9029844 | MDR-TB | lineage4 | None |
ERR13260512 | MDR-TB | lineage4 | None |
ERR2510234 | MDR-TB | lineage4 | pe |
ERR4457827 | MDR-TB | lineage4 | None |
ERR13260240 | MDR-TB | lineage4 | None |
ERR4813549 | MDR-TB | lineage4 | None |
SRR1163141 | MDR-TB | lineage4 | None |
ERR12117938 | MDR-TB | lineage4 | None |
SRR28394212 | MDR-TB | lineage4 | None |
ERR4178215 | HR-TB | lineage4 | None |
ERR4457805 | MDR-TB | lineage4 | None |
ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None |
ERR4811872 | HR-TB | lineage4 | pe |
ERR4812681 | MDR-TB | lineage4 | pe |