lineage | Count |
---|---|
lineage4 | 144 |
lineage1.1.2 | 8 |
lineage4.9 | 16 |
lineage2.2.1;lineage4 | 1 |
M.canetti;lineage2.2 | 2 |
lineage2.2.1.2;lineage7 | 1 |
lineage2.2.1 | 2 |
lineage4.3.4.2 | 1 |
lineage4.3.4.2.1 | 2 |
La1.7;lineage4.9 | 2 |
lineage4.6.3;lineage4.9 | 1 |
lineage4.1.2.1 | 1 |
1 | |
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
lineage4.8 | 1 |
M.canetti;lineage2.2.2;lineage6.2 | 2 |
spoligotype | Count |
---|---|
None | 186 |
ID | Drug resistance | Lineage | Country iso2 | ERR7910890 | MDR-TB | lineage4 | None | SRR1172881 | Sensitive | lineage1.1.2 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR4457875 | Other | lineage4 | None | ERR2516458 | MDR-TB | lineage4 | pe | ERR3287449 | Pre-XDR-TB | lineage4 | None | ERR13260439 | XDR-TB | lineage4 | None | ERR3287696 | MDR-TB | lineage4 | pe | ERR13260344 | MDR-TB | lineage4 | None | ERR3287360 | MDR-TB | lineage4 | pe | ERR12117965 | MDR-TB | lineage4 | None | SRR29772630 | MDR-TB | lineage1.1.2 | None | SRR3675246 | Other | lineage4.9 | None | SRR1175036 | Sensitive | lineage1.1.2 | None | ERR4025041 | MDR-TB | lineage4 | None | SRR28393572 | MDR-TB | lineage4 | None | ERR12118009 | MDR-TB | lineage4 | None | ERR4831007 | Pre-XDR-TB | lineage1.1.2 | np | ERR4024944 | MDR-TB | lineage4 | None | ERR7910889 | MDR-TB | lineage4 | None | ERR9029870 | MDR-TB | lineage4 | None | ERR13260151 | MDR-TB | lineage4 | None | SRR28351342 | HR-TB | lineage2.2.1;lineage4 | None | SRR28393265 | MDR-TB | lineage4 | None | ERR751411 | MDR-TB | lineage4 | pe | ERR751447 | MDR-TB | lineage4 | pe | ERR751478 | MDR-TB | lineage4 | pe | ERR779923 | MDR-TB | lineage4 | pe | ERR751540 | MDR-TB | lineage4 | pe | ERR751488 | MDR-TB | lineage4 | pe | ERR775364 | MDR-TB | lineage4 | pe | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR13261893 | MDR-TB | lineage4 | None | ERR4457776 | MDR-TB | lineage4 | None | SRR28393369 | MDR-TB | lineage4 | None | SRR28393599 | MDR-TB | lineage4 | None | ERR2516548 | MDR-TB | lineage4 | pe | ERR2516650 | Pre-XDR-TB | lineage4 | pe | SRR28393378 | MDR-TB | lineage4 | None | SAMEA5569750 | MDR-TB | lineage4 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | SRR13870364 | Pre-XDR-TB | lineage4 | None | ERR1034755 | MDR-TB | lineage4 | pe | SAMEA5569751 | MDR-TB | lineage4 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR4811935 | HR-TB | lineage4 | pe | ERR2516509 | MDR-TB | lineage4 | pe | SRR28394269 | MDR-TB | lineage4 | None | ERR3287864 | MDR-TB | lineage4 | pe | ERR4457925 | MDR-TB | lineage4 | None | ERR3287744 | HR-TB | lineage4 | pe | ERR4457924 | MDR-TB | lineage4 | None | ERR3287527 | MDR-TB | lineage4 | None | ERR2510234 | MDR-TB | lineage4 | pe | ERR4813549 | MDR-TB | lineage4 | None | ERR3287721 | MDR-TB | lineage4 | pe | ERR13260541 | MDR-TB | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265833 | Other | lineage4.9 | None | ERR4811872 | HR-TB | lineage4 | pe | SRR29096527 | Sensitive | lineage4.9 | None | ERR2516521 | MDR-TB | lineage4 | nl | ERR751326 | Other | lineage4.9 | None | SRR28393997 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR28393801 | MDR-TB | lineage4 | None | ERR7339051 | MDR-TB | lineage4 | None | ERR4812772 | MDR-TB | lineage4 | pe | ERR473332 | Other | lineage4.9 | None | SRR28858605 | MDR-TB | lineage4 | None | SRR28394044 | MDR-TB | lineage4 | None | ERR2516414 | MDR-TB | lineage4 | pe | ERR4813306 | MDR-TB | lineage4 | pe | ERR2516472 | MDR-TB | lineage4 | pe | ERR4553822 | MDR-TB | lineage1.1.2 | None | ERR3287791 | MDR-TB | lineage4 | pe | SRR29094378 | HR-TB | lineage4 | None | ERR13260301 | MDR-TB | lineage4 | None | ERR4812883 | MDR-TB | lineage4.9 | pe | ERR4457861 | MDR-TB | lineage4 | None | SRR28394268 | MDR-TB | lineage4 | None | SRR28393349 | MDR-TB | lineage4 | None | ERR751356 | MDR-TB | lineage4 | pe | ERR3287473 | HR-TB | lineage4 | pe | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR4457792 | HR-TB | lineage4 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR4812485 | Pre-XDR-TB | lineage4 | pe | ERR2516678 | MDR-TB | lineage4 | pe | ERR3287597 | MDR-TB | lineage4 | pe | SAMEA5569642 | Pre-XDR-TB | lineage4 | None | ERR4813495 | HR-TB | lineage4 | None | ERR2510175 | MDR-TB | lineage4 | pe | SRR1163300 | MDR-TB | lineage4 | None | ERR751414 | MDR-TB | lineage4 | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | SRR28393848 | MDR-TB | lineage4 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR11082091 | MDR-TB | lineage4 | None | SRR28394190 | MDR-TB | lineage4 | None | SRR29096195 | Sensitive | lineage4.9 | None | ERR13260594 | MDR-TB | lineage4 | None | ERR4813333 | MDR-TB | lineage4 | None | ERR4813465 | HR-TB | lineage4 | pe | ERR4798099 | Other | lineage4.9 | None | ERR13260512 | MDR-TB | lineage4 | None | SRR15217980 | HR-TB | lineage4 | None | SAMN02599138 | Sensitive | lineage1.1.2 | in | ERR3287555 | MDR-TB | lineage4 | None | ERR4457827 | MDR-TB | lineage4 | None | SRR28394212 | MDR-TB | lineage4 | None | ERR13260390 | MDR-TB | lineage4.1.2.1 | None | ERR3287445 | MDR-TB | lineage4 | pe | SRR29096685 | Sensitive | lineage4.9 | None | SRR29017110 | MDR-TB | lineage1.1.2 | None | ERR4457843 | MDR-TB | lineage4 | None | ERR12117926 | MDR-TB | lineage4 | None | SRR29096225 | Sensitive | lineage4.9 | None | SRR28393954 | MDR-TB | lineage4 | None | ERR4457819 | HR-TB | lineage4 | None | ERR7339052 | MDR-TB | lineage4 | None | ERR4457811 | MDR-TB | lineage4 | None | SRR28394232 | MDR-TB | lineage4 | None | ERR1034737 | MDR-TB | lineage4 | pe | SRR29772530 | MDR-TB | lineage1.1.2 | None | SRR28394078 | MDR-TB | lineage4 | None | ERR13261617 | MDR-TB | lineage4 | None | SRR28393626 | MDR-TB | lineage4 | None | ERR2516541 | Pre-XDR-TB | lineage4 | pe | ERR176560 | HR-TB | La1.7;lineage4.9 | None | SRR28393901 | MDR-TB | lineage4 | None | SRR28393361 | MDR-TB | lineage4 | None | SRR28394070 | Pre-XDR-TB | lineage4 | None | SRR28393551 | Pre-XDR-TB | lineage4 | None | SRR28393600 | Pre-XDR-TB | lineage4 | None | ERR212001 | HR-TB | None | SRR28393423 | MDR-TB | lineage4 | None | SRR28393306 | MDR-TB | lineage4 | None | ERR751521 | MDR-TB | lineage4 | pe | SRR28394271 | Pre-XDR-TB | lineage4 | None | ERR2516667 | MDR-TB | lineage4 | pe | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR3287846 | Pre-XDR-TB | lineage4 | pe | ERR3287735 | MDR-TB | lineage4 | pe | ERR775321 | MDR-TB | lineage4 | pe | ERR751620 | Pre-XDR-TB | lineage4 | pe | ERR775307 | HR-TB | lineage4 | pe | ERR779883 | MDR-TB | lineage4 | pe | ERR751465 | MDR-TB | lineage4 | pe | ERR751531 | MDR-TB | lineage4 | pe | ERR751526 | MDR-TB | lineage4 | pe | ERR751452 | Pre-XDR-TB | lineage4 | pe | ERR775319 | HR-TB | lineage4 | pe | SRR17234892 | MDR-TB | lineage4 | None | SRR28393529 | MDR-TB | lineage4 | None | SRR28394278 | MDR-TB | lineage4 | None | ERR1034756 | HR-TB | lineage4 | pe | ERR9029867 | Pre-XDR-TB | lineage4 | None | SRR28393624 | MDR-TB | lineage4 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR4178287 | MDR-TB | lineage4 | None | ERR3287443 | MDR-TB | lineage4 | pe | ERR4813603 | MDR-TB | lineage4 | None | SRR28393689 | MDR-TB | lineage4 | None | ERR4025071 | MDR-TB | lineage4 | None | ERR2516503 | Pre-XDR-TB | lineage4 | pe | ERR4813115 | MDR-TB | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR13284322 | MDR-TB | lineage4 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR28393318 | MDR-TB | lineage4 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR502511 | Sensitive | lineage4.9 | None | SRR28394260 | MDR-TB | lineage4 | None | ERR4812060 | HR-TB | lineage4 | pe | ERR9029844 | MDR-TB | lineage4 | None | ERR502510 | Sensitive | lineage4.9 | None | ERR13260240 | MDR-TB | lineage4 | None | SRR1163141 | MDR-TB | lineage4 | None | SRR29096194 | Sensitive | lineage4.9 | None | ERR12117938 | MDR-TB | lineage4 | None | ERR4178215 | HR-TB | lineage4 | None | ERR4457805 | MDR-TB | lineage4 | None | ERR4024541 | HR-TB | lineage4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR4812681 | MDR-TB | lineage4 | pe |
---|