Run ID: SRR29096195
Sample name:
Date: 2025-02-11T09:59:12.235871
Number of reads: 20934
Percentage reads mapped: 26.25
Median coverage: 0.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Sensitive
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | ||||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
mshA | 575821 | c.474G>T | synonymous_variant | 1.0 | isoniazid | |
ethionamide | ||||||
mshA | 575837 | c.490C>T | synonymous_variant | 1.0 | isoniazid | Not assoc w R - Interim |
ethionamide | Not assoc w R - Interim | |||||
mshA | 575842 | c.495G>C | synonymous_variant | 1.0 | isoniazid | |
ethionamide | ||||||
katG | 2155691 | c.421T>C | synonymous_variant | 1.0 | isoniazid | |
katG | 2155696 | p.Ala139Val | missense_variant | 1.0 | isoniazid | |
katG | 2155716 | c.396T>G | synonymous_variant | 1.0 | isoniazid | |
katG | 2155722 | c.390G>C | synonymous_variant | 1.0 | isoniazid | |
katG | 2155728 | c.384G>C | synonymous_variant | 1.0 | isoniazid | |
katG | 2155742 | p.Gly124Arg | missense_variant | 1.0 | isoniazid | |
katG | 2155747 | p.Ala122Gly | missense_variant | 1.0 | isoniazid | |
katG | 2155749 | c.363C>T | synonymous_variant | 1.0 | isoniazid | Not assoc w R - Interim |
katG | 2155752 | c.360C>T | synonymous_variant | 1.0 | isoniazid | |
katG | 2155764 | p.His116Glu | missense_variant | 1.0 | isoniazid | |
katG | 2155769 | p.Ile115Val | missense_variant | 1.0 | isoniazid | |
katG | 2155770 | c.342C>G | synonymous_variant | 1.0 | isoniazid | |
katG | 2155782 | c.330C>A | synonymous_variant | 1.0 | isoniazid |