lineage | Count |
---|---|
89 | |
lineage4.9 | 19 |
lineage3 | 3 |
lineage4 | 49 |
lineage2.2.1 | 10 |
lineage1.1.2 | 1 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.1.2.1 | 6 |
lineage2.2 | 2 |
lineage1.1.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.2 | 1 |
lineage4.5 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.1 | 2 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3 | 1 |
lineage2.1 | 2 |
lineage4.8 | 4 |
lineage4.1.1.3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.3.3 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage1.1 | 1 |
lineage2.2.1.1 | 1 |
La2 | 1 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 1 |
lineage4.1.2 | 2 |
lineage4.3.2.1 | 1 |
spoligotype | Count |
---|---|
None | 210 |
ID | Drug resistance | Lineage | Country iso2 | ERR3283024 | Other | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797044 | Other | None | ERR3797036 | HR-TB | None | ERR4024991 | Other | None | ERR3797083 | HR-TB | None | ERR387051 | HR-TB | None | ERR3797061 | Other | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4596902 | HR-TB | lineage3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR4769442 | HR-TB | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796577 | MDR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4798099 | Other | None | ERR4797474 | Other | None | ERR4797264 | Sensitive | None | ERR4798823 | HR-TB | lineage4 | None | ERR4798262 | HR-TB | La1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR6358951 | HR-TB | lineage4 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6866639 | Other | None | ERR6359045 | HR-TB | None | ERR6866022 | Other | None | ERR6866410 | Sensitive | None | ERR6866547 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736839 | Other | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR8976043 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9634265 | Sensitive | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1173568 | Other | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1169306 | Other | None | SRR1174897 | HR-TB | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR14801749 | Sensitive | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | ERR161033 | HR-TB | None | SRR1640750 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675482 | HR-TB | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675555 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | SRR3675456 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | ERR2229198 | MDR-TB | lineage4.8 | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816466 | HR-TB | None | ERR212123 | Other | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | SRR5341453 | Sensitive | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341387 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341300 | Other | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341467 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR278594 | HR-TB | None | ERR2693257 | Other | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6046133 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045952 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR3077978 | Other | lineage1.1 | None | ERR502510 | Sensitive | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR294248 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR502524 | HR-TB | La2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311090 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR8217918 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR323038 | HR-TB | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9970979 | Sensitive | lineage4.8 | None | ERR323063 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR067712 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1035122 | Sensitive | None | ERR133825 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None |
---|