Run ID: ERR4457827
Sample name:
Date: 01-04-2023 06:05:59
Number of reads: 1915113
Percentage reads mapped: 99.75
Strain: lineage4
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
mmpR5 | 779181 | c.198dupG | frameshift_variant | 1.0 | clofazimine, bedaquiline |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2289213 | p.Gln10Arg | missense_variant | 1.0 | pyrazinamide |
embB | 4247431 | p.Met306Ile | missense_variant | 1.0 | ethambutol |
ethA | 4326505 | c.966_968dupGAC | disruptive_inframe_insertion | 0.98 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 575510 | p.Ser55Gly | missense_variant | 1.0 |
mshA | 575837 | c.490C>T | synonymous_variant | 1.0 |
rpoB | 761889 | p.Val695Leu | missense_variant | 1.0 |
rpoC | 764819 | p.Trp484Gly | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777875 | c.605delG | frameshift_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 801009 | c.201A>G | synonymous_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2101831 | c.1212G>A | synonymous_variant | 1.0 |
katG | 2156173 | c.-62C>A | upstream_gene_variant | 1.0 |
Rv1979c | 2223214 | c.-50A>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726141 | c.-52C>A | upstream_gene_variant | 1.0 |
Rv2752c | 3065517 | c.675C>T | synonymous_variant | 1.0 |
thyA | 3074495 | c.-24C>T | upstream_gene_variant | 1.0 |
fprA | 3474299 | p.Asp98Gly | missense_variant | 1.0 |
Rv3236c | 3612219 | p.Val300Ile | missense_variant | 1.0 |
rpoA | 3878635 | c.-128C>T | upstream_gene_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4328317 | c.-844C>T | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407967 | p.Leu79Trp | missense_variant | 1.0 |