Rv2428 - c.-52C>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
3 Sensitive
26 RR-TB
31 HR-TB
154 MDR-TB
36 Pre-XDR-TB
4 XDR-TB
4 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.5 | 16 |
| lineage4 | 128 |
| lineage4.9 | 1 |
| lineage4.6.1.2 | 18 |
| lineage1.1.2 | 4 |
| lineage4.4.1.1 | 1 |
| lineage4.6.1.1 | 6 |
| lineage4.8 | 8 |
| lineage2.2.1.1 | 1 |
| lineage2.2.1 | 41 |
| lineage2.1 | 4 |
| lineage1.2.1.2.1 | 2 |
| lineage4.1.2.1 | 15 |
| lineage4.3 | 1 |
| lineage2.2;lineage4 | 5 |
| lineage4.4.2 | 2 |
| lineage4.7 | 1 |
| lineage5.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 258 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4811305 | RR-TB | lineage4.5 | cn | ERR4812060 | HR-TB | lineage4 | pe | SRR28393361 | MDR-TB | lineage4 | None | ERR3287696 | MDR-TB | lineage4 | pe | ERR3287721 | MDR-TB | lineage4 | pe | ERR4812883 | MDR-TB | lineage4.9 | pe | ERR751411 | MDR-TB | lineage4 | pe | ERR751356 | MDR-TB | lineage4 | pe | SRR28393600 | Pre-XDR-TB | lineage4 | None | SRR28393306 | MDR-TB | lineage4 | None | ERR751521 | MDR-TB | lineage4 | pe | SRR28394271 | Pre-XDR-TB | lineage4 | None | ERR2707183 | MDR-TB | lineage4.6.1.2 | cd | ERR751620 | Pre-XDR-TB | lineage4 | pe | ERR779883 | MDR-TB | lineage4 | pe | ERR751465 | MDR-TB | lineage4 | pe | ERR4829954 | Pre-XDR-TB | lineage1.1.2 | None | ERR3287558 | MDR-TB | lineage4 | None | ERR8975554 | HR-TB | lineage4.4.1.1 | None | ERR6358835 | RR-TB | lineage4.6.1.1 | None | ERR4457792 | HR-TB | lineage4 | None | ERR9029867 | Pre-XDR-TB | lineage4 | None | ERR2516357 | MDR-TB | lineage4.8 | be | ERR2510175 | MDR-TB | lineage4 | pe | ERR2510234 | MDR-TB | lineage4 | pe | ERR2515647 | RR-TB | lineage2.2.1.1 | za | SRR29231564 | MDR-TB | lineage4.6.1.2 | None | ERR13290317 | RR-TB | lineage4.5 | None | SRR29772503 | MDR-TB | lineage1.1.2 | None | ERR4457776 | MDR-TB | lineage4 | None | SRR28393378 | MDR-TB | lineage4 | None | SRR20632824 | XDR-TB | lineage2.2.1 | None | SRR671869 | MDR-TB | lineage2.2.1 | cn | SRR28393318 | MDR-TB | lineage4 | None | SRR11662289 | MDR-TB | lineage2.1 | None | SRR1146278 | MDR-TB | lineage2.2.1 | None | SRR28394269 | MDR-TB | lineage4 | None | SRR20632777 | XDR-TB | lineage2.2.1 | None | ERR3256211 | HR-TB | lineage1.2.1.2.1 | ph | SAMEA5569750 | MDR-TB | lineage4 | None | SAMEA5569751 | MDR-TB | lineage4 | None | ERR4872112 | RR-TB | lineage4.6.1.2 | None | ERR13260594 | MDR-TB | lineage4 | None | SRR1144747 | RR-TB | lineage4.5 | None | ERR9119518 | RR-TB | lineage4.6.1.2 | None | ERR6358776 | MDR-TB | lineage4.6.1.2 | None | ERR13260240 | MDR-TB | lineage4 | None | ERR4813549 | MDR-TB | lineage4 | None | SRR11662277 | Pre-XDR-TB | lineage2.1 | None | ERR12117938 | MDR-TB | lineage4 | None | SRR29274151 | MDR-TB | lineage4.1.2.1 | None | SRR24256030 | Pre-XDR-TB | lineage2.2.1 | None | ERR3273118 | MDR-TB | lineage4.3 | None | ERR751414 | MDR-TB | lineage4 | None | ERR6359013 | MDR-TB | lineage4.6.1.2 | None | SRR1049647 | HR-TB | lineage4.6.1.1 | None | ERR4457843 | MDR-TB | lineage4 | None | SRR29273760 | MDR-TB | lineage4.1.2.1 | None | ERR12117965 | MDR-TB | lineage4 | None | SRR29772699 | MDR-TB | lineage1.1.2 | None | ERR1654702 | MDR-TB | lineage4.6.1.2 | None | SRR30180346 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394044 | MDR-TB | lineage4 | None | ERR4024944 | MDR-TB | lineage4 | None | SRR1163229 | RR-TB | lineage4.5 | None | ERR7910889 | MDR-TB | lineage4 | None | ERR13260151 | MDR-TB | lineage4 | None | SRR29231796 | MDR-TB | lineage4.6.1.2 | None | ERR8773928 | HR-TB | lineage2.2.1 | None | SRR28393626 | MDR-TB | lineage4 | None | ERR551104 | RR-TB | lineage4.1.2.1 | None | SAMN02381021 | HR-TB | lineage4.6.1.1 | ug | ERR4813495 | HR-TB | lineage4 | None | ERR4813465 | HR-TB | lineage4 | pe | ERR3287360 | MDR-TB | lineage4 | pe | ERR3287864 | MDR-TB | lineage4 | pe | ERR3287473 | HR-TB | lineage4 | pe | ERR3287555 | MDR-TB | lineage4 | None | SRR28393265 | MDR-TB | lineage4 | None | ERR3287791 | MDR-TB | lineage4 | pe | SRR28394268 | MDR-TB | lineage4 | None | ERR4810760 | Sensitive | lineage4.5 | cn | ERR2707198 | MDR-TB | lineage4.6.1.2 | cd | ERR751447 | MDR-TB | lineage4 | pe | ERR4812485 | Pre-XDR-TB | lineage4 | pe | DRR130114 | Pre-XDR-TB | lineage2.2.1 | None | SRR17234892 | MDR-TB | lineage4 | None | SRR28393529 | MDR-TB | lineage4 | None | SRR28394278 | MDR-TB | lineage4 | None | SRR10828639 | Pre-XDR-TB | lineage2.1 | None | SRR25207329 | Pre-XDR-TB | lineage4.5 | None | SAMEA2533704 | MDR-TB | lineage4.1.2.1 | uz | ERR551196 | MDR-TB | lineage2.2.1 | de | ERR2516458 | MDR-TB | lineage4 | pe | ERR2516472 | MDR-TB | lineage4 | pe | ERR2516414 | MDR-TB | lineage4 | pe | ERR2516509 | MDR-TB | lineage4 | pe | SRR6824442 | RR-TB | lineage2.2.1 | cn | SRR20632806 | XDR-TB | lineage2.2.1 | None | SRR28393624 | MDR-TB | lineage4 | None | ERR11068567 | HR-TB | lineage4.1.2.1 | None | ERR1034756 | HR-TB | lineage4 | pe | SRR25206941 | RR-TB | lineage4.5 | None | SRR1163408 | RR-TB | lineage4.5 | None | ERR4813603 | MDR-TB | lineage4 | None | SRR13870364 | Pre-XDR-TB | lineage4 | None | SRR10306032 | MDR-TB | lineage2.2.1 | None | ERR6336710 | RR-TB | lineage1.2.1.2.1 | None | SRR28394260 | MDR-TB | lineage4 | None | SRR6785277 | HR-TB | lineage2.2.1 | None | ERR7910890 | MDR-TB | lineage4 | None | ERR11050265 | HR-TB | lineage4.1.2.1 | None | ERR11082091 | MDR-TB | lineage4 | None | SRR28394190 | MDR-TB | lineage4 | None | ERR13267497 | Pre-XDR-TB | lineage2.2.1 | None | ERR9029844 | MDR-TB | lineage4 | None | SRR29231006 | MDR-TB | lineage4.6.1.2 | None | ERR13284260 | MDR-TB | lineage2.2.1 | None | ERR13290315 | RR-TB | lineage4.5 | None | SRR25206908 | MDR-TB | lineage4.5 | None | SRR29772518 | MDR-TB | lineage1.1.2 | None | SRR1723443 | HR-TB | lineage2.2.1 | cn | SRR1723442 | HR-TB | lineage2.2.1 | cn | SRR1163141 | MDR-TB | lineage4 | None | SRR25514933 | Sensitive | lineage2.2.1 | None | SRR25389446 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394212 | MDR-TB | lineage4 | None | SRR29093536 | HR-TB | lineage4.1.2.1 | None | ERR11050013 | HR-TB | lineage4.1.2.1 | None | ERR13260390 | MDR-TB | lineage4.1.2.1 | None | ERR4811357 | Pre-XDR-TB | lineage4.5 | None | SRR18054804 | MDR-TB | lineage2.2.1 | None | SRR29231312 | MDR-TB | lineage4.6.1.2 | None | ERR13290464 | RR-TB | lineage2.2;lineage4 | None | ERR13260344 | MDR-TB | lineage4 | None | SRR13423583 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290462 | RR-TB | lineage2.2;lineage4 | None | ERR551105 | RR-TB | lineage4.1.2.1 | None | SRR25534517 | Pre-XDR-TB | lineage2.2.1 | None | SRR28357655 | HR-TB | lineage4.1.2.1 | None | SRR26112316 | HR-TB | lineage4.4.2 | None | SRR13423584 | Pre-XDR-TB | lineage2.2.1 | None | SRR1144804 | RR-TB | lineage2.2;lineage4 | None | SRR29539538 | Pre-XDR-TB | lineage2.2.1 | None | ERR4457811 | MDR-TB | lineage4 | None | SRR28858605 | MDR-TB | lineage4 | None | ERR4025041 | MDR-TB | lineage4 | None | SRR25389445 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394232 | MDR-TB | lineage4 | None | ERR2510535 | Pre-XDR-TB | lineage2.2.1 | pk | ERR12118009 | MDR-TB | lineage4 | None | SRR1140588 | HR-TB | lineage4.6.1.1 | None | ERR13290465 | RR-TB | lineage2.2;lineage4 | None | ERR13291057 | MDR-TB | lineage4.5 | None | ERR9029870 | MDR-TB | lineage4 | None | SRR28394078 | MDR-TB | lineage4 | None | SRR29094378 | HR-TB | lineage4 | None | SRR3725689 | Other | lineage4.7 | None | ERR551104_ERR551105 | MDR-TB | lineage4.1.2.1 | None | SAMN02414867 | RR-TB | lineage4.5 | se | ERR4811476 | Sensitive | lineage4.4.2 | cn | ERR3287505 | MDR-TB | lineage4 | None | ERR3287536 | MDR-TB | lineage4 | None | SRR17729372 | Other | lineage2.2.1 | None | ERR3287443 | MDR-TB | lineage4 | pe | ERR3287527 | MDR-TB | lineage4 | None | SRR27069408 | Pre-XDR-TB | lineage2.2.1 | None | SRR27069407 | MDR-TB | lineage2.2.1 | None | ERR3287846 | Pre-XDR-TB | lineage4 | pe | SRR28393551 | Pre-XDR-TB | lineage4 | None | SRR28393423 | MDR-TB | lineage4 | None | SRR2024904 | MDR-TB | lineage2.2.1 | cn | ERR2707200 | MDR-TB | lineage4.6.1.2 | cd | ERR4812681 | MDR-TB | lineage4 | pe | ERR2707129 | MDR-TB | lineage4.6.1.2 | cd | SRR1062911 | HR-TB | lineage4.6.1.1 | None | ERR4811872 | HR-TB | lineage4 | pe | ERR2707008 | MDR-TB | lineage4.6.1.2 | cd | ERR775321 | MDR-TB | lineage4 | pe | ERR4813306 | MDR-TB | lineage4 | pe | ERR751478 | MDR-TB | lineage4 | pe | ERR779923 | MDR-TB | lineage4 | pe | ERR751531 | MDR-TB | lineage4 | pe | ERR751526 | MDR-TB | lineage4 | pe | ERR751452 | Pre-XDR-TB | lineage4 | pe | ERR751540 | MDR-TB | lineage4 | pe | ERR751488 | MDR-TB | lineage4 | pe | ERR10680152 | RR-TB | lineage5.1 | None | SAMEA2534052 | MDR-TB | lineage4.8 | uz | ERR1199112 | MDR-TB | lineage4.6.1.2 | cd | ERR2516548 | MDR-TB | lineage4 | pe | ERR2516541 | Pre-XDR-TB | lineage4 | pe | ERR2516678 | MDR-TB | lineage4 | pe | ERR2516503 | Pre-XDR-TB | lineage4 | pe | ERR2516650 | Pre-XDR-TB | lineage4 | pe | ERR2041765 | MDR-TB | lineage4.1.2.1 | rs | SRR18665458 | MDR-TB | lineage4.1.1.3 | None | SRR1723592 | RR-TB | lineage2.2.1 | None | ERR551591 | MDR-TB | lineage4.8 | None | SRR29772718 | MDR-TB | lineage1.1.3.1 | None | ERR1034755 | MDR-TB | lineage4 | pe | ERR4178287 | MDR-TB | lineage4 | None | ERR13258429 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393369 | MDR-TB | lineage4 | None | ERR1654703 | MDR-TB | lineage4.6.1.2 | None | SRR6824654 | MDR-TB | lineage2.2.1 | cn | ERR4827755 | HR-TB | lineage2.2.1 | None | ERR551592 | MDR-TB | lineage4.8 | None | SRR28393689 | MDR-TB | lineage4 | None | SRR1049646 | HR-TB | lineage4.6.1.1 | None | ERR4025071 | MDR-TB | lineage4 | None | ERR4813115 | MDR-TB | lineage4 | None | SRR10040341 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284322 | MDR-TB | lineage4 | None | ERR7737734 | MDR-TB | lineage2.2.1 | None | SRR1163300 | MDR-TB | lineage4 | None | ERR3148043 | MDR-TB | lineage4.8 | None | SRR28393848 | MDR-TB | lineage4 | None | SRR10828645 | MDR-TB | lineage2.1 | None | SAMEA5569642 | Pre-XDR-TB | lineage4 | None | ERR8773927 | HR-TB | lineage2.2.1 | None | SRR1146312 | RR-TB | lineage4.5 | None | ERR4457925 | MDR-TB | lineage4 | None | ERR4457924 | MDR-TB | lineage4 | None | ERR13260512 | MDR-TB | lineage4 | None | ERR4457827 | MDR-TB | lineage4 | None | ERR13246262 | Other | lineage2.2.1 | None | ERR4178215 | HR-TB | lineage4 | None | ERR4457805 | MDR-TB | lineage4 | None | SRR15316314 | MDR-TB | lineage2.2.1 | None | SRR29231812 | MDR-TB | lineage4.6.1.2 | None | ERR4024541 | HR-TB | lineage4 | None | ERR1654699 | MDR-TB | lineage4.6.1.2 | None | DRR188526 | Other | lineage2.2.1 | None | SRR29274125 | MDR-TB | lineage4.1.2.1 | None | ERR13290316 | RR-TB | lineage4.5 | None | SRR29093920 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290314 | RR-TB | lineage4.5 | None | SRR29881209 | HR-TB | lineage4.1.2.1 | None | ERR3287449 | Pre-XDR-TB | lineage4 | None | ERR13260439 | XDR-TB | lineage4 | None | SRR28393997 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR12117926 | MDR-TB | lineage4 | None | SRR28393954 | MDR-TB | lineage4 | None | ERR7339051 | MDR-TB | lineage4 | None | ERR4457819 | HR-TB | lineage4 | None | ERR3287557 | MDR-TB | lineage4 | None | ERR7339052 | MDR-TB | lineage4 | None | SRR29273786 | Pre-XDR-TB | lineage4.8 | None | SRR28393572 | MDR-TB | lineage4 | None | ERR1034737 | MDR-TB | lineage4 | pe | ERR551592_ERR551591 | MDR-TB | lineage4.8 | None | ERR13290463 | RR-TB | lineage2.2;lineage4 | None | ERR4812772 | MDR-TB | lineage4 | pe | ERR3287445 | MDR-TB | lineage4 | pe | ERR3287597 | MDR-TB | lineage4 | pe | SRR28393262 | MDR-TB | lineage4.8 | None | ERR4457861 | MDR-TB | lineage4 | None |
|---|
