Rv0678 - c.198dupG
Drug resistance types
0 Sensitive
5 RR-TB
19 HR-TB
124 MDR-TB
16 Pre-XDR-TB
149 XDR-TB
52 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1 | 1 |
| lineage2.2.1 | 95 |
| lineage4.9 | 36 |
| lineage4 | 132 |
| lineage1.1.2;lineage2.2.1 | 1 |
| lineage4.3.3 | 17 |
| lineage4.2.1 | 4 |
| lineage1.2.2.2 | 6 |
| lineage2.2.1;lineage3 | 2 |
| lineage4.1.2.1 | 2 |
| lineage2.2.2 | 20 |
| lineage4.8 | 3 |
| lineage3.1.2.1 | 1 |
| lineage4.1.1.3 | 10 |
| lineage4.3.2.1 | 2 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1.1 | 6 |
| lineage2.2.1;lineage4.3.3 | 3 |
| lineage4.5 | 1 |
| lineage2.2.1.1 | 3 |
| lineage3 | 4 |
| lineage3;lineage4.5 | 1 |
| lineage2.2.1.1;lineage3 | 1 |
| lineage1.1.2 | 2 |
| lineage4.3.4.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.4.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.1 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 365 |
Geographic prevalence
Country level data for this variant is available for 80 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR5709755 | XDR-TB | lineage1.1.1 | th | ERR4799448 | XDR-TB | lineage2.2.1 | in | ERR2707155 | MDR-TB | lineage4.9 | cd | ERR5979744 | Other | lineage4.9 | None | ERR5979666 | Other | lineage4.9 | None | ERR10748140 | XDR-TB | lineage2.2.1 | None | ERR5979693 | Other | lineage4.9 | None | ERR4813549 | MDR-TB | lineage4 | None | SRR22175187 | XDR-TB | lineage1.1.2;lineage2.2.1 | None | ERR3287505 | MDR-TB | lineage4 | None | ERR9992993 | HR-TB | lineage2.2.1 | None | SRR27069367 | XDR-TB | lineage2.2.1 | None | SRR28393369 | MDR-TB | lineage4 | None | ERR12916927 | XDR-TB | lineage4.3.3 | None | SRR28393265 | MDR-TB | lineage4 | None | SRR28394268 | MDR-TB | lineage4 | None | SRR28351573 | XDR-TB | lineage2.2.1 | None | SRR28394232 | MDR-TB | lineage4 | None | SRR28498365 | XDR-TB | lineage4.2.1 | None | ERR11774913 | XDR-TB | lineage2.2.1 | None | SRR28394278 | MDR-TB | lineage4 | None | SRR28393600 | Pre-XDR-TB | lineage4 | None | SRR28393306 | MDR-TB | lineage4 | None | SRR28394271 | Pre-XDR-TB | lineage4 | None | SRR28394078 | MDR-TB | lineage4 | None | SRR28393599 | MDR-TB | lineage4 | None | SRR28706473 | XDR-TB | lineage2.2.1 | None | SRR28394212 | MDR-TB | lineage4 | None | SRR28393689 | MDR-TB | lineage4 | None | ERR7910890 | MDR-TB | lineage4 | None | ERR7339051 | MDR-TB | lineage4 | None | ERR3287443 | MDR-TB | lineage4 | pe | ERR9992635 | XDR-TB | lineage4.3.3 | None | ERR751478 | MDR-TB | lineage4 | pe | ERR751526 | MDR-TB | lineage4 | pe | ERR5979655 | Other | lineage4.9 | None | ERR4813115 | MDR-TB | lineage4 | None | ERR4810898 | XDR-TB | lineage2.2.1 | cn | ERR3276298 | XDR-TB | lineage2.2.1 | None | SRR25827700 | XDR-TB | lineage2.2.1 | None | ERR9029870 | MDR-TB | lineage4 | None | ERR9993036 | RR-TB | lineage2.2.1 | None | ERR751452 | Pre-XDR-TB | lineage4 | pe | ERR2516509 | MDR-TB | lineage4 | pe | ERR4178287 | MDR-TB | lineage4 | None | ERR5979654 | Other | lineage4.9 | None | SAMEA5569642 | Pre-XDR-TB | lineage4 | None | ERR4812681 | MDR-TB | lineage4 | pe | ERR751447 | MDR-TB | lineage4 | pe | ERR9992874 | XDR-TB | lineage1.2.2.2 | None | SRR1163300 | MDR-TB | lineage4 | None | ERR751414 | MDR-TB | lineage4 | None | ERR11081428 | MDR-TB | lineage2.2.1 | None | ERR8975648 | XDR-TB | lineage2.2.1 | None | SRR25827856 | MDR-TB | lineage2.2.1;lineage3 | None | SAMEA5569751 | MDR-TB | lineage4 | None | ERR9992928 | XDR-TB | lineage1.2.2.2 | None | ERR3287864 | MDR-TB | lineage4 | pe | ERR9993222 | XDR-TB | lineage2.2.1 | None | ERR3287557 | MDR-TB | lineage4 | None | ERR5979574 | Other | lineage4.9 | None | SRR22048313 | XDR-TB | lineage4.1.2.1 | None | SRR16087913 | XDR-TB | lineage2.2.1 | None | ERR4024541 | HR-TB | lineage4 | None | ERR4457924 | MDR-TB | lineage4 | None | ERR10112854 | XDR-TB | lineage2.2.1 | None | ERR9029844 | MDR-TB | lineage4 | None | ERR3287527 | MDR-TB | lineage4 | None | SRR16295771 | Other | lineage2.2.1 | None | ERR9992811 | XDR-TB | lineage2.2.2 | None | ERR3276299 | XDR-TB | lineage2.2.1 | None | ERR4457827 | MDR-TB | lineage4 | None | ERR9993159 | XDR-TB | lineage2.2.2 | None | ERR751411 | MDR-TB | lineage4 | pe | SRR11871436 | XDR-TB | lineage2.2.1 | None | ERR9029867 | Pre-XDR-TB | lineage4 | None | ERR4799796 | XDR-TB | lineage4.8 | in | ERR9993198 | XDR-TB | lineage2.2.2 | None | ERR5979575 | Other | lineage4.9 | None | ERR4813306 | MDR-TB | lineage4 | pe | ERR779883 | MDR-TB | lineage4 | pe | ERR4800701 | XDR-TB | lineage3.1.2.1 | None | ERR2515458 | MDR-TB | lineage2.2.1 | za | ERR2516650 | Pre-XDR-TB | lineage4 | pe | ERR4831122 | MDR-TB | lineage2.2.1 | de | SRR16295824 | Other | lineage2.2.1 | None | ERR2229151 | Other | lineage4.8 | dk | ERR9993087 | XDR-TB | lineage4.1.1.3 | None | ERR11044180 | XDR-TB | lineage2.2.1 | None | ERR5979658 | Other | lineage4.9 | None | ERR2516548 | MDR-TB | lineage4 | pe | ERR9992897 | XDR-TB | lineage1.2.2.2 | None | ERR2516521 | MDR-TB | lineage4 | nl | ERR8975704 | XDR-TB | lineage2.2.2 | None | ERR11082091 | MDR-TB | lineage4 | None | SRR16295762 | Other | lineage2.2.1 | None | ERR9992648 | XDR-TB | lineage4.3.2.1 | None | ERR3287555 | MDR-TB | lineage4 | None | SRR17657988 | Other | lineage2.2.1.2 | None | ERR3287360 | MDR-TB | lineage4 | pe | SRR24710119 | MDR-TB | lineage2.2.1 | None | SRR5710023 | XDR-TB | lineage2.2.1 | th | ERR12117965 | MDR-TB | lineage4 | None | ERR9992937 | XDR-TB | lineage4.4.1.1 | None | ERR4813571 | XDR-TB | lineage2.2.1 | None | ERR5917992 | XDR-TB | lineage2.2.2 | za | SRR14801756 | MDR-TB | lineage2.2.1 | None | ERR4457811 | MDR-TB | lineage4 | None | ERR751540 | MDR-TB | lineage4 | pe | ERR3287791 | MDR-TB | lineage4 | pe | ERR9992973 | XDR-TB | lineage2.2.1 | None | ERR4025041 | MDR-TB | lineage4 | None | SRR16295779 | Other | lineage2.2.1 | None | ERR5979677 | Other | lineage4.9 | None | ERR5979690 | Other | lineage4.9 | None | ERR9993120 | XDR-TB | lineage4.3.3 | None | ERR1034737 | MDR-TB | lineage4 | pe | ERR11068476 | MDR-TB | lineage4.1.2.1 | None | ERR9992974 | XDR-TB | lineage4.1.1.3 | None | ERR2516678 | MDR-TB | lineage4 | pe | ERR2516414 | MDR-TB | lineage4 | pe | ERR5979585 | Other | lineage4.9 | None | ERR5979676 | Other | lineage4.9 | None | ERR8975920 | XDR-TB | lineage2.2.2 | None | ERR9993020 | XDR-TB | lineage4.3.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR5979679 | Other | lineage4.9 | None | ERR5979584 | Other | lineage4.9 | None | ERR7911660 | XDR-TB | lineage2.2.2 | za | SRR13232759 | XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR2179776 | HR-TB | lineage4.5 | cn | ERR5979696 | Other | lineage4.9 | None | SRR12420386 | MDR-TB | lineage2.2.1 | None | ERR9992710 | XDR-TB | lineage2.2.1 | None | SRR11871447 | XDR-TB | lineage2.2.1 | None | ERR4797378 | XDR-TB | lineage2.2.1.1 | in | ERR9992929 | XDR-TB | lineage4.1.1.3 | None | ERR9993155 | XDR-TB | lineage2.2.1 | None | ERR5979649 | Other | lineage4.9 | None | ERR9992839 | XDR-TB | lineage4.1.1.3 | None | ERR11774908 | XDR-TB | lineage2.2.1 | None | ERR12916923 | XDR-TB | lineage4.3.3 | None | ERR12916915 | XDR-TB | lineage4.3.3 | None | SRR28394260 | MDR-TB | lineage4 | None | SRR28393848 | MDR-TB | lineage4 | None | SRR28393318 | MDR-TB | lineage4 | None | SRR28393626 | MDR-TB | lineage4 | None | SRR28394269 | MDR-TB | lineage4 | None | ERR11774911 | XDR-TB | lineage2.2.1 | None | SRR28498448 | XDR-TB | lineage4.2.1 | None | ERR12916920 | XDR-TB | lineage2.2.1 | None | SRR28888056 | XDR-TB | lineage2.2.1 | None | SRR28351318 | XDR-TB | lineage4.2.1 | None | SRR28394190 | MDR-TB | lineage4 | None | ERR12916922 | XDR-TB | lineage2.2.1 | None | SRR28393349 | MDR-TB | lineage4 | None | ERR12916913 | XDR-TB | lineage4.3.3 | None | SRR28393423 | MDR-TB | lineage4 | None | ERR11773813 | XDR-TB | lineage2.2.1 | None | ERR12916924 | XDR-TB | lineage2.2.1 | None | ERR11774909 | XDR-TB | lineage2.2.1 | None | ERR12916928 | XDR-TB | lineage4.3.3 | None | ERR2510596 | RR-TB | lineage3 | pk | ERR3335725 | RR-TB | lineage3 | pk | ERR4829960 | MDR-TB | lineage3;lineage4.5 | pk | ERR4829977 | RR-TB | lineage2.2.1.1;lineage3 | pk | ERR3287473 | HR-TB | lineage4 | pe | ERR751521 | MDR-TB | lineage4 | pe | ERR751620 | Pre-XDR-TB | lineage4 | pe | ERR3287846 | Pre-XDR-TB | lineage4 | pe | SRR13870364 | Pre-XDR-TB | lineage4 | None | ERR10748155 | XDR-TB | lineage2.2.1 | None | ERR4813828 | XDR-TB | lineage4.3.3 | None | ERR9807016 | XDR-TB | lineage2.2.2 | None | ERR4457925 | MDR-TB | lineage4 | None | ERR11044575 | MDR-TB | lineage2.2.1 | None | ERR4813603 | MDR-TB | lineage4 | None | ERR11068626 | MDR-TB | lineage2.2.1 | None | ERR8665615 | XDR-TB | lineage2.2.1 | None | ERR775321 | MDR-TB | lineage4 | pe | ERR9992918 | XDR-TB | lineage4.4.1.1 | None | ERR1034755 | MDR-TB | lineage4 | pe | ERR4800138 | Other | lineage1.1.2 | None | ERR2510175 | MDR-TB | lineage4 | pe | ERR5979583 | Other | lineage4.9 | None | ERR8665695 | XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR8975781 | XDR-TB | lineage4.1.1.3 | None | ERR4812485 | Pre-XDR-TB | lineage4 | pe | SRR14807466 | XDR-TB | lineage2.2.1 | None | ERR9992853 | XDR-TB | lineage2.2.2 | None | ERR5979576 | Other | lineage4.9 | None | ERR9993101 | XDR-TB | lineage2.2.1 | None | ERR751531 | MDR-TB | lineage4 | pe | ERR9992888 | XDR-TB | lineage4.4.1.1 | None | ERR9992812 | XDR-TB | lineage2.2.2 | None | SRR16087881 | XDR-TB | lineage2.2.1 | None | SRR26397809 | XDR-TB | lineage4.3.4.1 | None | ERR5979678 | Other | lineage4.9 | None | ERR5979616 | Other | lineage4.9 | None | SRR25827489 | XDR-TB | lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | None | SRR22175193 | XDR-TB | lineage2.2.1 | None | ERR9993223 | XDR-TB | lineage2.2.1.1 | None | ERR9992746 | XDR-TB | lineage4.1.1.3 | None | ERR4813333 | MDR-TB | lineage4 | None | ERR4813465 | HR-TB | lineage4 | pe | SRR28240002 | XDR-TB | lineage4.3.3 | None | SRR17657989 | Other | lineage2.2.1.2 | None | ERR9992851 | XDR-TB | lineage4.1.1.1 | None | ERR3287445 | MDR-TB | lineage4 | pe | SRR15217980 | HR-TB | lineage4 | None | ERR10748106 | XDR-TB | lineage2.2.1 | None | ERR751488 | MDR-TB | lineage4 | pe | ERR775307 | HR-TB | lineage4 | pe | ERR4796328 | XDR-TB | lineage2.2.1 | in | ERR5979686 | Other | lineage4.9 | None | SRR10397187 | XDR-TB | lineage2.2.1 | None | ERR8975682 | XDR-TB | lineage4.3.3 | None | ERR3287721 | MDR-TB | lineage4 | pe | ERR12117938 | MDR-TB | lineage4 | None | ERR4178215 | HR-TB | lineage4 | None | ERR9992647 | XDR-TB | lineage4.3.3 | None | SRR18714869 | Other | lineage4.8 | None | ERR9992939 | XDR-TB | lineage2.2.1 | None | ERR2516794 | MDR-TB | lineage3 | gb | ERR5979579 | Other | lineage4.9 | None | SRR19295646 | MDR-TB | lineage1.1.2 | None | ERR9992762 | XDR-TB | lineage4.1.1.3 | None | ERR9993208 | XDR-TB | lineage4.1.1.3 | None | ERR3287696 | MDR-TB | lineage4 | pe | ERR9993109 | Other | lineage2.2.1 | None | ERR9993183 | XDR-TB | lineage2.2.2 | None | ERR8975656 | XDR-TB | lineage2.2.2 | None | SRR25827435 | XDR-TB | lineage2.2.1.1 | None | ERR9993213 | MDR-TB | lineage2.2.1 | None | ERR751465 | MDR-TB | lineage4 | pe | SRR13232624 | XDR-TB | lineage2.2.1 | None | ERR8975667 | XDR-TB | lineage2.2.2 | None | SRR17234892 | MDR-TB | lineage4 | None | SRR14807481 | XDR-TB | lineage2.2.1 | None | ERR9992935 | XDR-TB | lineage1.2.2.2 | None | ERR2510234 | MDR-TB | lineage4 | pe | ERR5979749 | Other | lineage4.9 | None | ERR5979578 | Other | lineage4.9 | None | ERR10748132 | XDR-TB | lineage4.4.1.1 | None | SRR5184989 | XDR-TB | lineage2.2.1 | None | ERR9992898 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR12142393 | Other | lineage2.2.1 | None | ERR5979701 | Other | lineage4.9 | None | ERR2516472 | MDR-TB | lineage4 | pe | SRR16295804 | Other | lineage2.2.1 | None | ERR3287449 | Pre-XDR-TB | lineage4 | None | SRR23311000 | XDR-TB | lineage2.2.1 | None | ERR7910889 | MDR-TB | lineage4 | None | SRR22175239 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | ERR7975629 | XDR-TB | lineage2.2.1 | None | SRR6824484 | XDR-TB | lineage4.4.2 | cn | SRR2024984 | MDR-TB | lineage2.2.1 | cn | ERR4831534 | XDR-TB | lineage2.2.2 | None | ERR5979582 | Other | lineage4.9 | None | SRR11871423 | HR-TB | lineage2.2.1 | None | ERR9993231 | XDR-TB | lineage2.2.1 | None | ERR2516541 | Pre-XDR-TB | lineage4 | pe | ERR775364 | MDR-TB | lineage4 | pe | ERR9993054 | XDR-TB | lineage4.1.1.3 | None | ERR5979684 | Other | lineage4.9 | None | SRR28351398 | XDR-TB | lineage4.2.1 | None | SRR28393572 | MDR-TB | lineage4 | None | SRR28393901 | MDR-TB | lineage4 | None | SRR28393361 | MDR-TB | lineage4 | None | SRR28393801 | MDR-TB | lineage4 | None | SRR28393624 | MDR-TB | lineage4 | None | ERR12916914 | XDR-TB | lineage2.2.1 | None | SRR28434979 | XDR-TB | lineage2.2.1 | None | SRR28393954 | MDR-TB | lineage4 | None | ERR11773765 | XDR-TB | lineage2.2.1 | None | SRR28394044 | MDR-TB | lineage4 | None | SRR28393529 | MDR-TB | lineage4 | None | SRR28393997 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR28394070 | Pre-XDR-TB | lineage4 | None | SRR28393551 | Pre-XDR-TB | lineage4 | None | ERR11774959 | XDR-TB | lineage2.2.1 | None | SRR28393378 | MDR-TB | lineage4 | None | ERR4457776 | MDR-TB | lineage4 | None | SRR13243565 | XDR-TB | lineage2.2.1 | None | ERR5979581 | Other | lineage4.9 | None | SRR25827400 | HR-TB | lineage3 | None | ERR4457861 | MDR-TB | lineage4 | None | ERR4812883 | MDR-TB | lineage4.9 | pe | ERR9992652 | XDR-TB | lineage2.2.1 | None | ERR4798942 | XDR-TB | lineage3.1.2 | in | ERR4811935 | HR-TB | lineage4 | pe | ERR5979577 | Other | lineage4.9 | None | ERR5979662 | Other | lineage4.9 | None | ERR2516667 | MDR-TB | lineage4 | pe | ERR4813495 | HR-TB | lineage4 | None | ERR8025441 | XDR-TB | lineage2.2.2 | None | ERR11488873 | RR-TB | lineage4.9 | None | ERR7737921 | MDR-TB | lineage4.3.3 | None | ERR10748485 | XDR-TB | lineage4.1.1.3 | None | ERR3287536 | MDR-TB | lineage4 | None | ERR9992797 | XDR-TB | lineage2.2.2 | None | ERR4812060 | HR-TB | lineage4 | pe | ERR4872344 | XDR-TB | lineage2.2.1 | None | ERR9993200 | XDR-TB | lineage2.2.2 | None | ERR4872296 | XDR-TB | lineage2.2.1 | None | ERR4831543 | XDR-TB | lineage2.2.2 | None | SRR16295773 | Other | lineage2.2.1 | None | SRR16295756 | Other | lineage2.2.1 | None | ERR4011117 | XDR-TB | lineage2.2.2 | None | ERR3287744 | HR-TB | lineage4 | pe | ERR1034756 | HR-TB | lineage4 | pe | ERR9993042 | XDR-TB | lineage1.2.2.2 | None | ERR8665694 | XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR3287558 | MDR-TB | lineage4 | None | SRR13243567 | XDR-TB | lineage2.2.1 | None | ERR4797408 | XDR-TB | lineage2.2.1 | in | ERR8975018 | XDR-TB | lineage4.3.3 | None | ERR9993056 | XDR-TB | lineage1.2.2.2 | None | ERR5979586 | Other | lineage4.9 | None | SAMEA5569750 | MDR-TB | lineage4 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | SRR1140898 | MDR-TB | lineage2.2.1 | None | ERR4025071 | MDR-TB | lineage4 | None | ERR4797406 | XDR-TB | lineage2.2.1 | in | ERR4811872 | HR-TB | lineage4 | pe | ERR9992903 | XDR-TB | lineage4.3.2.1 | None | ERR9992749 | XDR-TB | lineage4.4.1.1 | None | SRR16295814 | Other | lineage2.2.1 | None | SRR1019146 | MDR-TB | lineage2.2.1 | None | ERR4457805 | MDR-TB | lineage4 | None | SRR24256213 | Other | lineage4.1 | None | SRR1163141 | MDR-TB | lineage4 | None | ERR9992871 | XDR-TB | lineage4.3.3 | None | ERR8975764 | XDR-TB | lineage4.4.1.1 | None | SRR16088206 | XDR-TB | lineage2.2.1 | None | ERR2516458 | MDR-TB | lineage4 | pe | ERR4798677 | XDR-TB | lineage2.2.1 | in | ERR775319 | HR-TB | lineage4 | pe | ERR4809177 | XDR-TB | lineage2.2.1 | za | SRR16295776 | Other | lineage2.2.1 | None | SRR11871440 | XDR-TB | lineage2.2.1 | None | ERR9993195 | XDR-TB | lineage2.2.2 | None | ERR4457843 | MDR-TB | lineage4 | None | ERR9992870 | XDR-TB | lineage2.2.1 | None | ERR2516503 | Pre-XDR-TB | lineage4 | pe | SRR16295816 | Other | lineage2.2.1 | None | ERR9992791 | XDR-TB | lineage4.3.3 | None | ERR4024944 | MDR-TB | lineage4 | None | ERR4812772 | MDR-TB | lineage4 | pe | ERR5979685 | Other | lineage4.9 | None | ERR4457819 | HR-TB | lineage4 | None | ERR3287597 | MDR-TB | lineage4 | pe | ERR8975008 | XDR-TB | lineage2.2.1 | None | ERR751356 | MDR-TB | lineage4 | pe | ERR7339052 | MDR-TB | lineage4 | None | SRR24255938 | XDR-TB | lineage2.2.1 | None | ERR8975670 | Other | lineage4.1 | None | SRR25827704 | XDR-TB | lineage2.2.1 | None | ERR3287735 | MDR-TB | lineage4 | pe | ERR12118009 | MDR-TB | lineage4 | None | SRR16088543 | XDR-TB | lineage2.2.1 | None | SRR25827504 | MDR-TB | lineage2.2.1;lineage3 | None | ERR8665616 | XDR-TB | lineage2.2.1 | None | ERR4457792 | HR-TB | lineage4 | None | ERR5979580 | Other | lineage4.9 | None |
|---|
