Rv0006 - c.1395G>C


Drug resistance types
32 Sensitive 5 RR-TB 51 HR-TB 13 MDR-TB 5 Pre-XDR-TB 0 XDR-TB 110 Other
lineage Counts
lineage Count
lineage4.9 65
lineage4.3.2.1 1
lineage2.1;lineage4.9 14
lineage2.2.1 9
19
lineage4.9;lineage6.3 6
La1.7;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 9
La1.7.1;lineage4.9 1
lineage4.1.3 2
lineage2.2.1;lineage3;lineage4 1
La3 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage2.1 3
lineage1.1.3.1 1
lineage4.9;lineage7 3
La3;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage4.4.1.1 1
La3;lineage2.1;lineage4.9;lineage6.3 4
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.9;lineage7 3
lineage4.1.2.1 8
lineage4.1.1.3 1
lineage4.2;lineage4.9 1
lineage4.2;lineage4.6.3;lineage4.9 1
lineage4.3.3 2
lineage6.1.3 1
La3;lineage2.1;lineage6.3 1
lineage4.6.1.1 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.8 2
lineage6.3.1 1
La3;lineage2.1;lineage4.9 2
La3;lineage1.1.2 1
lineage4.1.2 2
lineage2.2 2
lineage4 4
lineage1;lineage4.9 1
La1.7.1;La1.7.X-unk4 1
lineage3 1
lineage4.3.4.1 1
La1;lineage4.1.2 1
M.canetti;lineage2.1;lineage6.3 1
lineage4.6.2.2 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage7 1
La1.2.BCG;La1.8.1 1
La3;lineage2 1
lineage4.5 2
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage2.2.1;lineage6.3 1
lineage4.1.1.1 1
lineage4.2.1 1
M.canetti;lineage2.1;lineage4.9 2
lineage2.1;lineage6.3 2
La3;lineage4.8 2
lineage4.8.1 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage4.2;lineage4.8.1;lineage4.9 1
lineage2.2.2;lineage4 1
La1.7;M.canetti;lineage4.9 1
La1.7;lineage4.9;lineage6 1
lineage4.1;lineage4.9 1
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
La3;lineage2.2.1 1
La1.2;La1.8.1 1
spoligotype Counts
spoligotype Count
None 216
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR3675582 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675280 RR-TB lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
SRR3675236 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
SRR7535086 Other None
SRR25827605 Pre-XDR-TB lineage2.2.1;lineage3;lineage4 None
ERR926154 Sensitive lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR1172728 RR-TB La3 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR702406 Other lineage2.1 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR1034634 HR-TB lineage4.9 None
SRR29017461 Other La3;lineage4.9 None
SRR6045706 Sensitive lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6045892 Sensitive lineage4.9 None
SRR7496472 Other lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR9786642 Other lineage4.1.2.1 None
SRR1184381 MDR-TB None
SRR28119805 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4814352 Other lineage2.2.1 None
ERR11465024 Other lineage4.1.1.3 None
ERR9786601 Other lineage4.1.2.1 None
SRR12142341 HR-TB lineage2.1 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR9786604 Other None
SRR1165667 Other lineage4.9;lineage6.3 None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
SRR21732980 Other lineage4.3.3 None
ERR926155 Sensitive lineage4.9 None
ERR9787165 Other lineage6.1.3 None
SRR1172951 Other lineage4.9 None
ERR176651 Other lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR2514327 HR-TB lineage4.8 None
ERR387051 Other lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR1063896 Sensitive None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR18003019 Other lineage2.2.1 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR9970980 HR-TB lineage4.1.2 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR7496517 Other None
SRR20969708 HR-TB lineage2.2 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4815604 Other None
ERR181887 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR4816999 Other None
ERR4769474 HR-TB lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR926161 Sensitive lineage4.9 None
SRR1196546 Other lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR926163 Other lineage4.9 None
SRR3675260 Sensitive lineage4.9 None
ERR3283021 HR-TB lineage4.9 None
ERR926159 Sensitive lineage4.9 None
ERR4800341 Other lineage3 None
ERR4817731 HR-TB lineage4.9 None
SRR28119777 Other lineage4.9 None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR12416842 HR-TB lineage4.9 None
ERR4816656 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
SRR9970978 Sensitive La1;lineage4.1.2 None
SRR7496509 Other None
ERR4797054 Pre-XDR-TB lineage2.1 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
ERR4797264 Sensitive lineage4.9 None
SRR20970016 Other lineage2.2 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR6789621 Other lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR926156 Sensitive lineage4.9 None
SRR3675539 HR-TB lineage4.9;lineage7 None
SRR1184372 MDR-TB None
SRR3675555 HR-TB lineage2.1;lineage4.9;lineage7 None
SRR6046382 Sensitive lineage2.2.1 None
ERR4815752 Other lineage4.9 None
SRR6045380 Other lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
ERR926157 Sensitive lineage4.9 None
SRR1173778 Other lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR9786569 Other lineage4.8 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR4818929 HR-TB lineage4.9 None
SRR1196583 Other lineage4.9 None
SRR29016780 Other lineage4.9 None
SRR18213713 HR-TB None
SRR20969677 HR-TB La3;lineage2 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR26399973 Other La3;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
ERR4820773 HR-TB lineage4.9 None
SRR3675495 Other lineage2.1;lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
ERR13249487 Sensitive lineage4.5 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926162 Sensitive lineage4.9 None
ERR323107 Sensitive lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
ERR926160 Sensitive lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
SRR6511621 Sensitive lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR176779 HR-TB lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4816478 HR-TB lineage4 None
ERR971389 Sensitive lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR926164 Other lineage4.9 None
ERR9117709 Other None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR3797047 MDR-TB lineage4.9 None
SRR1172817 Other La3 None
SRR1172234 Other lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR7131023 Other lineage4.1.2.1 None
ERR3797070 Other lineage4.9 None
SRR3675221 Other lineage4.9 None
SRR28351339 MDR-TB lineage4 None
ERR9787197 Other None
ERR4817060 Other None
SRR29093105 Other lineage2.2.2;lineage4 None
ERR9786671 Other None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR4819422 HR-TB lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR926165 Sensitive lineage4.9 None
SRR3675572 Other None
ERR4818347 Other lineage4.1.2 None
SRR3675465 Other lineage4.9;lineage6.3 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
ERR9786694 Other lineage4.1.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1196768 MDR-TB None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
SRR6046540 Other lineage2.1;lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4798431 Sensitive lineage4.1;lineage4.9 None
ERR4817893 Other La3;lineage4.8 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR736817 HR-TB lineage4.3.4 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
DRR188832 Other lineage4.5 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR6358979 Other lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR7240033 Other La1.2;La1.8.1 None
SRR6789626 Other None
ERR926158 Sensitive lineage4.9 None