lineage | Count |
---|---|
76 | |
lineage4.1.2 | 1 |
lineage4.9 | 6 |
lineage4 | 3 |
La2 | 1 |
lineage4;lineage3.1 | 1 |
La1.2 | 1 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage2.2 | 2 |
lineage1.1.2 | 1 |
lineage4.5 | 1 |
lineage4.2.1.1 | 1 |
La3 | 1 |
lineage2.2.1.2 | 1 |
lineage2.2.1.1 | 3 |
lineage2.2.1 | 3 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.8 | 1 |
lineage4.1 | 1 |
lineage3 | 1 |
spoligotype | Count |
---|---|
None | 109 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045519 | HR-TB | None | SRR6046133 | HR-TB | None | ERR2679270 | HR-TB | lineage4.1.2 | None | SRR6045555 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6046492 | Other | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR8217918 | HR-TB | None | ERR4831117 | HR-TB | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR323053 | HR-TB | None | ERR323039 | HR-TB | None | ERR1063858 | HR-TB | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR1063862 | HR-TB | None | ERR133986 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283058 | Other | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR387051 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4769521 | HR-TB | None | ERR736865 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR6358991 | HR-TB | None | ERR736835 | HR-TB | None | ERR987722 | HR-TB | None | SRR21733183 | RR-TB | lineage1.1.2 | None | ERR752229 | Other | lineage4.5 | None | SRR11033632 | Other | lineage4.2.1.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1174897 | HR-TB | None | SRR1172310 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1184024 | Other | lineage2.2.1.1 | None | ERR158583 | HR-TB | None | SRR14782405 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR3675502 | Other | None | ERR181744 | HR-TB | None | SRR3675456 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675488 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | SRR3675501 | HR-TB | None | ERR176740 | HR-TB | None | ERR212001 | HR-TB | None | ERR212123 | Other | None | SRR3675555 | HR-TB | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR2446566 | Other | lineage4.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR234659 | HR-TB | None | SRR5341418 | Other | None | SRR5341330 | HR-TB | None | SRR5341313 | HR-TB | None | ERR2693231 | Other | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341470 | HR-TB | None | SRR6045503 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | SRR6045526 | HR-TB | None | ERR2693257 | Other | None | SRR5535933 | HR-TB | None |
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