Rv0006 - p.Asp504Glu
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
67 Sensitive
2 RR-TB
46 HR-TB
10 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
46 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage4.9 | 66 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti | 58 |
| La3;lineage4.9 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La2;lineage2.2 | 1 |
| lineage4 | 2 |
| La1.7;lineage4.9 | 4 |
| La2;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| 3 | |
| lineage6.1.3 | 1 |
| lineage6.1.1 | 2 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage4.9;lineage7 | 1 |
| lineage2.2.1 | 5 |
| lineage4.8 | 2 |
| lineage4.4.1.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage3.1.2.1 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 173 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046878 | Other | lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR6866807 | Other | lineage4.9 | None | ERR3597005 | Sensitive | M.canetti | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR5818567 | Other | M.canetti | dj | ERR502511 | Sensitive | lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9125475 | Sensitive | M.canetti | None | SRR6045053 | Other | lineage4 | None | ERR313115 | Sensitive | M.canetti | None | SRR6046046 | Other | lineage4.9 | None | ERR4817181 | Sensitive | M.canetti | None | ERR4819927 | Sensitive | M.canetti | None | ERR4821046 | Sensitive | M.canetti | None | SRR16058674 | Sensitive | M.canetti | None | SRR5818685 | Sensitive | M.canetti | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | SRR6650709 | Sensitive | M.canetti | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR6358991 | HR-TB | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | ERR266109 | Sensitive | M.canetti | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR10177263 | Sensitive | M.canetti | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR5818661 | Other | M.canetti | dj | ERR552305 | Sensitive | M.canetti | None | SRR29096150 | Other | lineage4.9 | None | SRR9970980 | Other | lineage4.1.2 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SAMEA6086630 | Sensitive | M.canetti | None | SAMEA2534556 | Sensitive | M.canetti | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR24061599 | Sensitive | M.canetti | None | SRR24061600 | Sensitive | M.canetti | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR551055 | Sensitive | M.canetti | None | ERR9125480 | Sensitive | M.canetti | None | SRR5818614 | Sensitive | M.canetti | dj | ERR313116 | Sensitive | M.canetti | None | ERR313114 | Sensitive | M.canetti | None | ERR313117 | Sensitive | M.canetti | None | ERR4815361 | Other | M.canetti | None | ERR313113 | Sensitive | M.canetti | None | ERR7451301 | Sensitive | M.canetti | None | SRR10177261 | Sensitive | M.canetti | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR22179528 | Sensitive | M.canetti | None | SRR10177259 | Other | M.canetti | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR6045347 | Other | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | ERR266106 | Sensitive | M.canetti | None | ERR3797043 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR18289196 | Sensitive | M.canetti | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR10177258 | Other | M.canetti | None | SRR5818676 | Other | M.canetti | dj | SRR24061598 | Sensitive | M.canetti | None | ERR4769452 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR552306 | Sensitive | M.canetti;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | ERR4797264 | Sensitive | lineage4.9 | None | SAMEA2533665 | Sensitive | M.canetti | None | ERR987722 | MDR-TB | None | SRR6045555 | Other | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR29096410 | Other | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR266123 | Sensitive | M.canetti | None | ERR736872 | HR-TB | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | ERR266107 | Other | M.canetti | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3597001 | Sensitive | M.canetti | None | ERR3597002 | Sensitive | M.canetti | None | ERR3597007 | Sensitive | M.canetti | None | ERR551057 | Sensitive | M.canetti | None | ERR552307 | Sensitive | M.canetti | None | ERR552304 | Sensitive | M.canetti | None | ERR11465351 | Sensitive | lineage4.1.2.1 | None | SRR16058668 | Sensitive | M.canetti | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR21277793 | Sensitive | lineage2.2.1 | None | ERR551056 | Sensitive | M.canetti | None | ERR266110 | Other | M.canetti | None | ERR266108 | Sensitive | M.canetti | None | SRR29056248 | Sensitive | M.canetti | None | ERR181887 | Other | lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR6046593 | Other | lineage4.9 | None | SRR29096879 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR266120 | Sensitive | M.canetti | None | SRR5818652 | Sensitive | M.canetti | dj | SRR5818653 | Sensitive | M.canetti | dj | ERR176779 | HR-TB | lineage4.9 | None | SRR29096659 | Sensitive | lineage4.9 | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR5341453 | Other | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR4816656 | Other | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR29097026 | Other | lineage4.9 | None | SRR10177260 | Other | M.canetti | None | ERR779852 | Sensitive | lineage4.9 | None | SRR28170812 | Sensitive | M.canetti | None | SRR5818605 | Other | M.canetti | None | SRR5341299 | HR-TB | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | SRR10177262 | Sensitive | M.canetti | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3597003 | Sensitive | M.canetti | None | SRR5818668 | Sensitive | M.canetti | dj |
|---|
