Rv3696c - c.1122G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33 Sensitive
5 RR-TB
42 HR-TB
8 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
77 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.9 | 4 |
| lineage4.9 | 53 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La1.7;M.canetti;lineage4.9 | 4 |
| 15 | |
| M.canetti;lineage2.2 | 2 |
| lineage4.8 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.2.1 | 12 |
| La1.7;lineage4.9 | 4 |
| lineage4.5 | 1 |
| lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.1;lineage4.9 | 6 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.6.2.2 | 4 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2.1 | 6 |
| lineage5.2 | 2 |
| lineage4 | 2 |
| lineage6 | 1 |
| lineage1.1.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.9;lineage6.3 | 2 |
| lineage5.1.4 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage4.9 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 1 |
| La3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.2 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.7 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1 | 1 |
| lineage4.1.1.1 | 1 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 169 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | SRR12708416 | Sensitive | None | ERR9786843 | Other | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | ERR2514692 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR2199833 | HR-TB | lineage4.8 | de | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR3675522 | Other | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR4811075 | Other | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR5341323 | Sensitive | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR3283032 | Other | lineage4.9 | None | ERR9787165 | Other | lineage6 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR6046485 | Other | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR212001 | HR-TB | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR10808730 | Other | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR29051077 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR400326 | Other | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR2514821 | Sensitive | lineage2.2.1 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4830353 | Other | La1.7 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4800341 | Other | None | SRR26159043 | Other | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR4811142 | RR-TB | None | ERR4811311 | Other | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1196546 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR7535086 | Other | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR9117721 | HR-TB | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675229 | Sensitive | lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046594 | Sensitive | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None |
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