lineage | Count |
---|---|
lineage4.9 | 37 |
lineage4.5 | 2 |
lineage2.2.1 | 8 |
lineage1.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.1 | 1 |
lineage9;lineage3.1 | 1 |
74 | |
La1.8.1 | 2 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.3.4 | 1 |
lineage4 | 3 |
lineage3;lineage2.1 | 1 |
lineage4.8 | 3 |
lineage3 | 4 |
lineage4.1.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.2.1 | 13 |
lineage1.1 | 1 |
lineage3.1 | 2 |
lineage4.3.3 | 1 |
lineage4.3.2.1 | 1 |
lineage4.3.4.1;La1.7 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.6.2.2 | 2 |
lineage4.9;La1.3 | 1 |
La1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4.6.5 | 2 |
lineage6.1.3 | 1 |
lineage4.8;lineage4.3.3 | 2 |
lineage2.2.2 | 1 |
lineage2 | 1 |
lineage4.4.1.1 | 2 |
spoligotype | Count |
---|---|
None | 180 |
ID | Drug resistance | Lineage | Country iso2 | SRR1184308 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861224 | Sensitive | lineage4.9 | None | SRR13861266 | Sensitive | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861329 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675488 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4815310 | Other | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4815550 | Other | lineage4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675222 | Other | None | SRR3675234 | Other | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR181744 | HR-TB | None | SRR3675501 | HR-TB | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675383 | HR-TB | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675456 | HR-TB | None | SRR3675555 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212034 | HR-TB | None | ERR4817069 | RR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR212121 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR1035138 | MDR-TB | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2693239 | HR-TB | None | ERR4820030 | Other | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693231 | Other | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR2693230 | Other | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046152 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6045399 | Other | None | SRR6325444 | HR-TB | None | SRR6046362 | HR-TB | None | ERR4830353 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046460 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046737 | Other | lineage4.9 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR3077978 | Other | lineage1.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR294248 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7535086 | Other | None | SRR9971112 | Other | lineage2.2.1 | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323041 | HR-TB | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283021 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797017 | Other | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3468544 | HR-TB | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR3797043 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR387051 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR6358837 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR9786523 | Sensitive | lineage4.1.2.1 | None | ERR8976043 | HR-TB | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173310 | MDR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None |
---|