Rv3457c - c.-554C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
3 RR-TB
32 HR-TB
9 MDR-TB
1 Pre-XDR-TB
2 XDR-TB
35 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 2 |
| lineage4.9 | 26 |
| lineage4.3.4.2.1 | 1 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| M.canetti;lineage1 | 1 |
| lineage4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1.2.1 | 1 |
| 5 | |
| lineage4.6.2.2 | 2 |
| lineage2.2.1.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage2.2.1 | 6 |
| La1.8.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage2.2.1.1 | 3 |
| lineage4.1.1.3;lineage4.9 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 1 |
| lineage4.3.4 | 1 |
| lineage4.1.1.3 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3 | 2 |
| lineage2.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage4.9;lineage7 | 2 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.8 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.1 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 96 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR2514692 | Other | None | ERR212001 | HR-TB | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR6045503 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4769474 | HR-TB | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR9896144 | Other | lineage3 | None | ERR990545 | Other | lineage3 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR181887 | Other | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR212138 | HR-TB | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR9786843 | Other | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6046397 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1183049 | RR-TB | lineage2.2 | None |
|---|
