Rv0407 - c.504G>C
Drug resistance types
27 Sensitive
3 RR-TB
172 HR-TB
25 MDR-TB
14 Pre-XDR-TB
0 XDR-TB
109 Other
lineage Counts
| lineage | Count |
|---|---|
| 174 | |
| lineage4.1.2 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage3.1 | 3 |
| lineage4.1.2.1 | 14 |
| lineage4 | 29 |
| lineage4.9 | 33 |
| lineage2.2 | 6 |
| La1 | 2 |
| La1.8.1 | 3 |
| lineage4.1.3 | 2 |
| lineage4.6.2.2 | 3 |
| lineage3 | 6 |
| lineage2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1 | 34 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage1.1.3.1 | 1 |
| lineage5.2 | 2 |
| lineage6.3.1 | 1 |
| lineage2.2.2 | 1 |
| lineage2.2.1.2 | 2 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.5 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.1.1 | 2 |
| lineage4.3.2.1 | 2 |
| lineage4.1 | 2 |
| lineage4.3.4 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.8 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 350 |
Geographic prevalence
Country level data for this variant is available for 15 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR323063 | HR-TB | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535086 | Other | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1063859 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR3283010 | Other | La1 | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283024 | Other | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3283051 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797043 | HR-TB | None | ERR363506 | Sensitive | lineage4 | None | ERR3797024 | Other | lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797069 | Other | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR400529 | Other | lineage3 | None | ERR387051 | HR-TB | None | ERR4769452 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR4178226 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798406 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798262 | HR-TB | La1 | None | ERR4810741 | HR-TB | None | ERR4810473 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4810483 | MDR-TB | lineage2.2.1 | cn | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4811303 | MDR-TB | lineage2.2.1 | cn | ERR4810790 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811022 | HR-TB | None | ERR4810972 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4810997 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811363 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811322 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811312 | MDR-TB | lineage2.2.1 | cn | ERR4811367 | MDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR702406 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9117709 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9634265 | Sensitive | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787197 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173118 | Other | None | SRR1172857 | MDR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173400 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1184381 | MDR-TB | None | SRR1173629 | Other | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR12416824 | HR-TB | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR17787489 | MDR-TB | lineage2.2.1 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR14782405 | HR-TB | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR15368973 | Other | None | SRR17787491 | MDR-TB | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR18548991 | MDR-TB | lineage2.2.1 | None | SRR18054798 | Pre-XDR-TB | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19276626 | HR-TB | lineage4.3.3 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR2101360 | MDR-TB | lineage4.1.2.1 | None | SRR21887763 | Pre-XDR-TB | lineage2.2.1 | None | ERR176778 | HR-TB | None | SRR20970016 | Other | lineage2.2 | None | SRR2101463 | Sensitive | lineage4.3.2.1 | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675482 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675488 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675501 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675236 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675270 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675311 | Other | None | ERR176751 | HR-TB | None | ERR176651 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675503 | Sensitive | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR3275220 | Other | lineage3 | nl | ERR4816999 | Other | None | ERR212034 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675574 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816466 | HR-TB | None | ERR4816550 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4810931 | MDR-TB | lineage2.2.1 | cn | ERR4816585 | Other | lineage2.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816656 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR1035162 | Other | None | ERR234659 | HR-TB | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2446144 | Other | lineage3 | nl | SRR5341418 | Other | None | ERR4819462 | Other | lineage4 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819781 | Other | lineage2.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341333 | HR-TB | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR2693257 | Other | None | ERR6359082 | Other | lineage4.9 | None | ERR2693254 | Other | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | ERR2517528 | Other | lineage3 | nl | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR6045526 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6045555 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6046133 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6325444 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2446563 | Other | lineage2.2.1 | nl | SRR6046362 | HR-TB | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046397 | Other | None | SRR6325448 | HR-TB | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046540 | HR-TB | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046802 | Other | lineage4 | None | SRR6896222 | Sensitive | lineage4.3.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR294248 | HR-TB | None | SRR6789626 | Other | None | SRR6824363 | RR-TB | lineage2.2.1 | cn | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | SRR7496517 | Other | None |
|---|
