Rv2245 - c.678C>G


Drug resistance types
38 Sensitive 14 RR-TB 92 HR-TB 44 MDR-TB 4 Pre-XDR-TB 0 XDR-TB 79 Other
lineage Counts
lineage Count
lineage4.9 84
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;M.canetti;lineage4.9 2
lineage4 4
M.canetti;lineage2.1;lineage4.9 24
lineage4.1.2.1 6
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 5
lineage1.1 1
lineage2.1;lineage4.9 6
lineage2.2.1 15
lineage4.3.4.2.1 1
lineage4.6.1 1
M.canetti;lineage1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage2.2 1
lineage4.9;lineage6.3 1
lineage4.5 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
M.canetti;lineage4.9 5
La1.8.1 3
M.canetti;lineage2.1;lineage6.3 1
lineage4.2;lineage4.6.3;lineage4.9.1 2
lineage4.3.2.1 1
lineage4.1.2 2
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage4.3.4.1 1
lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
lineage2.2.1;lineage4.1.2.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage4.2;lineage4.8.1;lineage4.9 2
La1.7;lineage4.9;lineage7 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage4.8;lineage4.9 2
La1.7;lineage4.9 6
lineage4.4.1.1 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
4
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.2;lineage4.6.3;lineage4.9 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.2;lineage4.9 3
La3;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
La3;M.canetti;lineage2.1;lineage3.1 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
La1.7;lineage3.1;lineage4 1
lineage4.1.1.3 1
lineage3 1
lineage4.6.2.2 1
lineage4.1.2.1.1 1
lineage4.9;lineage9 1
lineage5.2 2
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2.2.1.2 1
La1;lineage4.9 1
lineage4.8 2
lineage2.2.1.1 3
M.canetti;lineage2.1;lineage3 1
lineage4.6.3;lineage4.9 1
La1.7;M.canetti;lineage4.9 2
lineage2.1;lineage4.9;lineage6.3 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
M.canetti;lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4 1
La1.7 1
M.canetti;lineage2.2 1
lineage4.3.4 1
La1.7;lineage4.3.4.1 1
lineage4.9.1 1
La1;lineage2;lineage4.9 1
lineage4.3.2 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage1.1.2;lineage4 1
lineage4.1.1;lineage4.9 1
lineage1.1.3.1 1
lineage4.1.1.1 1
La1.7.1 1
La3;M.canetti;lineage3.1 1
La1.2.BCG 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.X-unk4;lineage4.9 1
spoligotype Counts
spoligotype Count
None 271
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR5535933 Other lineage4.9 None
ERR5162090 RR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR4188247 HR-TB lineage4.9 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR6045053 Other lineage4 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
SRR1162740 Other lineage4.1.2.1 None
SRR3675269 RR-TB lineage4.9 None
ERR323107 Sensitive lineage4.9 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR5341300 HR-TB lineage4.9 None
ERR3077978 Other lineage1.1 None
SRR6045347 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR13266684 Pre-XDR-TB lineage2.2.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR6046593 Other lineage4.9 None
SRR5341366 Sensitive lineage4.9 None
ERR4769457 Other lineage4.9 None
ERR2660539 Other lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR4797184 Sensitive lineage4.9 None
ERR124636 Sensitive lineage4.9 None
ERR6358755 Other lineage4.6.1 None
SRR15014655 Other M.canetti;lineage1 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR3273109 HR-TB lineage4 None
ERR8976043 HR-TB lineage2.2 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR12142339 HR-TB lineage2.2.1 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR5341303 Sensitive lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
SRR29096387 Sensitive M.canetti;lineage4.9 None
SRR1791696 Other La1.8.1 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR20969708 HR-TB lineage2.2.1 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR9970978 Sensitive lineage4.1.2 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR4831117 HR-TB lineage4.9;lineage7 None
SRR9970980 Other lineage4.1.2 None
ERR4769452 Other lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR11488822 Pre-XDR-TB lineage2.2.1;lineage4.1.2.1 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SRR6045785 MDR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR323085 Sensitive lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4797264 Sensitive lineage4.9 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4024991 Other lineage4.8;lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
SRR28351339 MDR-TB lineage4 None
SRR10808730 Other lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1162864 Other lineage4.1.2.1 None
SRR6044815 Other lineage4.9 None
ERR4819422 HR-TB lineage4.9 None
ERR6866022 Other lineage4.8;lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR3675243 Other lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR1640750 Other None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6046878 Other lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311097 Sensitive lineage4.2;lineage4.6.3;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR323062 Sensitive lineage4.9 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4819241 Other lineage4.9 None
ERR4828872 Sensitive lineage4.2;lineage4.9 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR3675571 HR-TB M.canetti;lineage4.2;lineage4.9 None
ERR736872 HR-TB lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR1063896 Sensitive None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR502511 Sensitive lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR3675501 Other La1.7;lineage4.9 None
ERR3797083 RR-TB lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4798099 Other lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR3675235 Sensitive lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR10809074 Sensitive lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR502510 Sensitive lineage4.9 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4821053 Other lineage3 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4819809 HR-TB lineage4.6.2.2 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR294266 HR-TB lineage4.2;lineage4.8.1;lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR4872094 MDR-TB lineage5.2 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6511621 Sensitive lineage4.9 None
ERR4815441 HR-TB lineage4.9 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR13423649 Sensitive lineage2.2.1 None
SRR13861399 Other lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9119500 MDR-TB lineage5.2 None
ERR4817731 HR-TB lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2 None
SRR8217918 HR-TB lineage4.9 None
ERR1035122 Sensitive lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR12416842 HR-TB lineage4.9 None
SRR20969731 Other lineage2.2.1 None
ERR133825 HR-TB La1;lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR3675246 Other lineage4.9 None
SRR1180172 Other lineage2.2.1 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR9970979 Sensitive lineage4.8 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
ERR3797046 HR-TB lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
ERR779852 Sensitive lineage4.9 None
ERR736834 Sensitive lineage4.9 None
SRR3675585 Sensitive lineage4.9 None
SRR5341298 Sensitive lineage4.9 None
SRR1180147 Other lineage2.2.1.1 None
SRR29017081 Sensitive lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1183106 RR-TB lineage2.2.1.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046295 HR-TB lineage4.2;lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4797474 Sensitive lineage4.9 None
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4796254 Sensitive lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1158918 Sensitive lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR323066 Sensitive lineage4.9 None
ERR3797029 Other lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675385 Other La1.7;lineage4.9 None
SRR3675270 Other lineage4.9 None
SRR3675507 Other lineage4.9 None
ERR1063856 HR-TB M.canetti;lineage4.9;lineage9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
SRR3675482 Other lineage4.9 None
ERR702405 Sensitive lineage4.9 None
SRR1166821 Other lineage4.1.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4830353 Other La1.7 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR736839 HR-TB M.canetti;lineage4.9 None
ERR736856 Sensitive lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR212123 Other lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
ERR161039 Sensitive lineage4.3.4 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR11465802 Other La1.7;lineage4.3.4.1 None
ERR245758 Other lineage4.9.1 None
ERR4819051 Sensitive lineage4.9 None
ERR067699 Sensitive La1;lineage2;lineage4.9 None
ERR6358991 HR-TB None
ERR5917710 Other lineage4.1.2.1 None
ERR772255 MDR-TB lineage4.3.2 None
ERR161037 Other lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR29231479 RR-TB lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR7535086 Other None
SRR13861381 HR-TB lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR20970016 Other lineage2.2.1 None
SRR5341453 Other lineage4.9 None
SRR13861288 Other lineage4.9 None
SRR13861396 HR-TB lineage4.9 None
ERR6866639 Other lineage4.9 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
SRR6325442 HR-TB lineage4.1.1;lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR4816656 Other lineage4.9 None
SRR6325447 HR-TB lineage4.1.1.1 None
SRR3675449 Other M.canetti;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR7240033 Other La1.8.1 None
SRR3675494 RR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR1183144 Other lineage2.2.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR1915487 Other La1.2.BCG None
SRR6046026 RR-TB lineage4.2;lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR3283055 HR-TB lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR137286 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR1159378 Other lineage4.9 None