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SRA data
Rv0639
- c.-46T>C
Drug resistance types
4 Sensitive
2 RR-TB
42 HR-TB
24 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
18 Other
lineage Counts
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lineage
Count
lineage
Count
lineage4.9
13
M.canetti;lineage2.1;lineage4.9
11
M.canetti;lineage2.1;lineage4.9;lineage6.3
5
La3;M.canetti;lineage2.1;lineage4.9
4
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3
4
lineage2.2.1
3
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
3
La1.7;M.canetti;lineage4.9
3
lineage4.2;lineage4.9
3
lineage2.1;lineage4.1.1.1;lineage6.3
2
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spoligotype Counts
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spoligotype
Count
spoligotype
Count
None
92
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Geographic prevalence
Country level data for this variant is available for 0 isolates.
+
−
Variant Proportion
Hover over a Country
0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
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Statisctical support
Not enough data to calculate support.
Samples
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ID
Drug resistance
Lineage
Country iso2
ID
Drug resistance
Lineage
Country iso2
ERR1023295
MDR-TB
M.canetti;lineage2.1;lineage4.1.2.1
None
ERR1034652
Other
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2
None
ERR11488822
Pre-XDR-TB
lineage2.2.1;lineage4.1.2.1
None
ERR124642
MDR-TB
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
None
ERR124651
MDR-TB
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3
None
ERR124652
HR-TB
La3;M.canetti;lineage2.1;lineage4.9
None
ERR126600
HR-TB
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
None
ERR126618
MDR-TB
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3
None
ERR133986
Other
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7
None
ERR1873393
HR-TB
M.canetti;lineage2.1;lineage4.9
None
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