Rv3696c - c.1026C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
30 Sensitive
2 RR-TB
25 HR-TB
5 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
29 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 41 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| La1;lineage4.9 | 1 |
| lineage4 | 2 |
| La1.7;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.2;lineage4.9 | 3 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.9 | 2 |
| lineage3.1.3 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1 | 1 |
| lineage4.3.4.2.1 | 1 |
| 2 | |
| lineage5.1.4 | 1 |
| lineage4.9;lineage7 | 3 |
| lineage4.8 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 3 |
| La3;lineage4.9 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6045219 | HR-TB | lineage4.9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR28351339 | MDR-TB | lineage4 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR473332 | Other | lineage4.9 | None | ERR11465511 | Other | lineage4.3.4.2.1 | None | SRR12708416 | Sensitive | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR10808399 | Sensitive | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR3283032 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR5311094 | HR-TB | lineage4.9 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6045892 | Sensitive | lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR9786843 | Other | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR3675522 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR2693254 | Other | La1.6;La3;lineage4.9 | None | SRR14801749 | HR-TB | lineage4.9 | None |
|---|
