lineage | Count |
---|---|
50 | |
lineage4 | 14 |
La1.8.1 | 2 |
lineage4.9 | 16 |
lineage4;lineage3.1 | 1 |
lineage4.3.3 | 3 |
lineage4.1.2.1 | 9 |
lineage4.3.4 | 1 |
lineage2.2.1 | 7 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.5 | 1 |
lineage4.1.1.3 | 2 |
lineage1.2.1.2.1 | 1 |
lineage3 | 3 |
La1.7.1 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.8 | 1 |
lineage1.1 | 1 |
lineage2 | 1 |
lineage4.3.4.1 | 2 |
lineage3.1 | 2 |
lineage4.3.4.2.1 | 2 |
lineage4.4.1.2 | 1 |
spoligotype | Count |
---|---|
None | 130 |
ID | Drug resistance | Lineage | Country iso2 | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR3797083 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4188350 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358837 | HR-TB | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861447 | RR-TB | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | ERR176778 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR176779 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176651 | HR-TB | None | SRR3675510 | Other | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675570 | Sensitive | lineage4.9 | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR212138 | HR-TB | lineage4 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4816656 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341373 | HR-TB | lineage4 | None | ERR4818929 | HR-TB | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341315 | Sensitive | None | SRR5341313 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6046225 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6325442 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | ERR278594 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | ERR323036 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6832171 | Pre-XDR-TB | lineage2 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR323041 | HR-TB | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR3283017 | HR-TB | None | ERR1063859 | HR-TB | None | ERR11465511 | Sensitive | lineage4.3.4.2.1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283040 | HR-TB | None |
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