Rv0667 - c.1383T>G
Drug resistance types
4 Sensitive
44 RR-TB
22 HR-TB
100 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
43 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9;lineage7 | 4 |
| lineage4.9 | 47 |
| M.canetti;lineage4.9 | 4 |
| lineage4.8 | 3 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 24 |
| lineage3.1.2.1;lineage3.1.2.2 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage6.1.1 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| lineage3 | 6 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage3.1.2.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.3.2 | 1 |
| lineage4.9;lineage9 | 3 |
| lineage2.2.1 | 8 |
| lineage4.3.3 | 2 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.1;lineage4.9 | 6 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.3.4 | 1 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 7 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La3;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.1.2.1.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage1.1 | 1 |
| La1.7.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| 3 | |
| La1;lineage4.9 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.9.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.8.1 | 2 |
| M.canetti;lineage2.2 | 1 |
| La1.2;La1.8.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage4 | 1 |
| lineage5.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage1.1.2;lineage4 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage6.1.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 214 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR1172310 | MDR-TB | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | SRR3675487 | MDR-TB | M.canetti;lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR5311089 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797016 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR987729 | MDR-TB | lineage3.1.2.1;lineage3.1.2.2 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3799304 | RR-TB | lineage6.1.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2517528 | RR-TB | lineage3 | nl | ERR038268 | MDR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | SRR26159063 | RR-TB | lineage4.9 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675486 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR323058 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4816551 | MDR-TB | lineage4.1.1.3 | None | SRR6325442 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR2446566 | Other | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR2229143 | RR-TB | lineage4.9 | None | ERR6358837 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR13423544 | Other | lineage4.5 | None | SRR6044815 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | SRR3675450 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675494 | RR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR3675243 | MDR-TB | lineage4.9 | None | ERR5311083 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046485 | Other | lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | SRR5341456 | Other | lineage4.9 | None | ERR161037 | HR-TB | lineage4.9 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | SRR3675554 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323040 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR3675507 | RR-TB | lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR9787014 | RR-TB | lineage6.1.1 | None | SRR3675322 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR124652 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | MDR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR5311098 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR323063 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR3275220 | Other | lineage3 | nl | SRR6325448 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675269 | RR-TB | lineage4.9 | None | SRR3675545 | RR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR323047 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR323060 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR176658 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR23961558 | RR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | ERR5311096 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | SRR13861553 | RR-TB | lineage4.9 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR8665994 | RR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR323041 | MDR-TB | M.canetti;lineage2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR1510066 | RR-TB | lineage1.2.1.2.1 | None | ERR126608 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675515 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675320 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3077978 | RR-TB | lineage1.1 | None | ERR473314 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR7240492 | MDR-TB | La1.7.1 | None | SRR6046594 | Other | lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675383 | Sensitive | lineage4.9 | None | SRR1640750 | RR-TB | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR8976043 | MDR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR5341330 | Other | lineage4.9 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR3675270 | Other | lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045217 | Other | lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR245758 | Other | lineage4.9.1 | None | ERR3797083 | RR-TB | lineage4.9 | None | ERR4821053 | RR-TB | lineage3 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675561 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1791696 | RR-TB | La1.8.1 | None | SRR6045548 | Other | lineage4.9 | None | SRR3675444 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399239 | Sensitive | lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | SRR3675506 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | MDR-TB | La1.8.1 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR17832802 | HR-TB | lineage3 | None | ERR3283016 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR386953 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR6045219 | HR-TB | lineage4.9 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | SRR1166821 | RR-TB | lineage4.1.2.1 | None | ERR5917710 | RR-TB | lineage4.1.2.1 | None | ERR323036 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR126600 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR3468544 | RR-TB | lineage2.1;lineage4.9 | None | ERR2446144 | Other | lineage3 | nl | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | SRR5485614 | RR-TB | lineage4.9 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR4769452 | Other | lineage4.9 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR3468607 | RR-TB | lineage4.9 | None | ERR4188350 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3275196 | RR-TB | lineage2.2.1 | nl | SRR3675464 | MDR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | ERR323038 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR3675568 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR6045053 | Other | lineage4 | None | SRR7535086 | Other | None | ERR987722 | MDR-TB | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR278594 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6325445 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4817692 | MDR-TB | lineage1.1.2;lineage4 | None | ERR176766 | MDR-TB | lineage2.1;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675441 | RR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR2693242 | RR-TB | lineage2.1;lineage4.9 | None | ERR176675 | Sensitive | lineage4.3.4.2.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR6046492 | Other | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675482 | RR-TB | lineage4.9 | None |
|---|
