lineage | Count |
---|---|
lineage6 | 1 |
lineage6.3.1 | 1 |
160 | |
lineage4 | 21 |
lineage4.1.2.1 | 13 |
La3 | 1 |
lineage2.2.1.2 | 1 |
lineage3.1 | 3 |
lineage4.4.1.1 | 1 |
lineage2.2.1 | 14 |
lineage2.2.1.1 | 4 |
lineage1.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage4.9 | 23 |
lineage4.2.1 | 1 |
lineage3 | 3 |
lineage2.2 | 4 |
lineage2 | 1 |
lineage4.9;La3 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1 | 2 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.2;La1.7 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3 | 1 |
lineage4.8 | 4 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 2 |
lineage1.1 | 1 |
lineage4.2.1.1 | 1 |
La1.8.1 | 1 |
lineage4.6.2.2 | 3 |
La1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.3.3 | 2 |
La1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.3.2 | 1 |
lineage1.1.3.1 | 1 |
lineage1.1.2 | 1 |
lineage4.8;lineage4.1 | 1 |
lineage4.3.4.2 | 1 |
spoligotype | Count |
---|---|
None | 286 |
ID | Drug resistance | Lineage | Country iso2 | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR10809074 | Sensitive | lineage4 | None | SRR1172817 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173778 | Other | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR16058668 | Sensitive | None | SRR13861556 | Other | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR15368973 | Other | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR22179528 | Sensitive | None | SRR20970016 | Other | lineage2.2 | None | SRR24061599 | Sensitive | None | SRR24061598 | Sensitive | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR24061600 | Sensitive | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | ERR4815361 | Sensitive | None | SRR3675501 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675222 | Other | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | SRR3675270 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675383 | HR-TB | None | ERR176643 | HR-TB | None | ERR4816019 | Sensitive | None | ERR176751 | HR-TB | None | SRR3675456 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR212033 | HR-TB | None | SRR3675550 | Other | None | ERR4816466 | HR-TB | None | SRR3675555 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4817181 | Sensitive | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR1035162 | Other | None | ERR2446566 | Other | lineage4.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | SRR5818653 | Sensitive | dj | ERR3275196 | Other | lineage2.2.1 | nl | SRR5818661 | Sensitive | dj | ERR2229143 | Other | lineage4.1.1 | None | SRR5818668 | Sensitive | dj | ERR4818929 | HR-TB | None | SRR5818614 | Sensitive | dj | SRR5818567 | Sensitive | dj | SRR5818652 | Sensitive | dj | ERR4819927 | Sensitive | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341418 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR6045519 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693254 | Other | None | ERR2693231 | Other | None | ERR4821046 | Sensitive | None | ERR2693230 | Other | None | ERR2693257 | Other | None | SRR6046141 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR5818605 | Sensitive | None | SRR5818685 | Sensitive | None | SRR6046133 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045053 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6045233 | HR-TB | None | SRR6045399 | Other | None | SRR6325444 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046397 | Other | None | ERR4830353 | Other | None | SRR6046460 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6325448 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR294248 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6789626 | Other | None | ERR294266 | HR-TB | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR502889 | Other | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323043 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323055 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323107 | Other | lineage4 | None | ERR323063 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067681 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3445501 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3439432 | Other | None | ERR3597005 | Sensitive | None | ERR3597003 | Sensitive | None | ERR3468544 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3597007 | Sensitive | None | ERR3597001 | Sensitive | None | ERR3597002 | Sensitive | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797036 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR4188350 | HR-TB | None | ERR387051 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4769521 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR6358979 | Other | None | ERR4796929 | Sensitive | lineage4 | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4810741 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4799025 | Pre-XDR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358991 | HR-TB | None | ERR702406 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR7451301 | Sensitive | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736856 | HR-TB | lineage4 | None | ERR7451300 | Sensitive | None | ERR736874 | HR-TB | None | ERR9119669 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9125480 | Sensitive | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786671 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None |
---|