Rv0006 - c.1416C>G
Drug resistance types
22 Sensitive
3 RR-TB
98 HR-TB
5 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
48 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 19 |
| lineage4.2.1 | 1 |
| 95 | |
| lineage4.1.2.1 | 7 |
| lineage9;lineage3.1 | 1 |
| lineage4.1 | 2 |
| lineage4.9;lineage4.6.3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1 | 16 |
| lineage4.1.1 | 1 |
| lineage4 | 20 |
| lineage3 | 2 |
| lineage4.8 | 2 |
| lineage3.1 | 2 |
| lineage1.1 | 1 |
| lineage4.3.3 | 3 |
| La2 | 1 |
| lineage6.1.1 | 2 |
| lineage3.1.2 | 1 |
| La1.2 | 1 |
| La1 | 1 |
| lineage2.2 | 2 |
| lineage4.3.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage2.2.1.1 | 3 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 188 |
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13861528 | HR-TB | lineage4.9 | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | ERR11082738 | Sensitive | lineage4.1.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR6325445 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR212123 | Other | None | SRR3675234 | Other | None | ERR181744 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | ERR2446566 | Other | lineage4.1 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SRR5067508 | Sensitive | lineage4.1.2.1 | vn | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818110 | Sensitive | lineage4.9 | None | ERR2229143 | Other | lineage4.1.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341315 | Sensitive | None | ERR1035138 | MDR-TB | None | SRR5341313 | HR-TB | None | SRR5341470 | HR-TB | None | SRR5341330 | HR-TB | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693231 | Other | None | ERR6359082 | Other | lineage4.9 | None | ERR2693257 | Other | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR2693254 | Other | None | ERR278594 | HR-TB | None | SRR6045519 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6044838 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6045053 | Other | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6045233 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6045399 | Other | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | ERR4829753 | RR-TB | lineage2.2.1 | None | SRR6046460 | HR-TB | None | SRR6046492 | Other | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325442 | HR-TB | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR323036 | HR-TB | None | ERR323041 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323039 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323063 | HR-TB | None | ERR323108 | HR-TB | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR1034634 | HR-TB | None | ERR1023525 | HR-TB | lineage4 | None | ERR11044854 | Sensitive | lineage2.2.1 | None | ERR1063883 | Sensitive | lineage4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR11044855 | Sensitive | lineage2.2.1 | None | ERR3283024 | Other | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR323115 | Sensitive | lineage4 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797044 | Other | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR4188350 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR4769450 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4798431 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR6358837 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4812262 | Sensitive | lineage2.2.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736837 | Other | lineage4.9 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR8976043 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR987722 | HR-TB | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013581 | Pre-XDR-TB | lineage2.2 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1172310 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1174897 | HR-TB | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861400 | Other | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861372 | Other | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None |
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