Rv1221 - c.552T>C


Drug resistance types
16 Sensitive 13 RR-TB 25 HR-TB 26 MDR-TB 0 Pre-XDR-TB 2 XDR-TB 28 Other
lineage Counts
lineage Count
lineage1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3 3
lineage4.9 25
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
lineage4.3.3 12
lineage4.2;lineage4.9 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.2.1 7
M.canetti;lineage2.2 2
lineage4.3.4.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage4 1
lineage4.5 1
La1;lineage4.9 1
lineage2.2 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage4.2;lineage4.9 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
lineage2.2.1.2;lineage7 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La1.7.1;lineage4.9 1
lineage2.2.1.1 3
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.9;lineage7 4
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.7.1 2
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage4.9;lineage6.3 2
3
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage4.1.1.3 1
La1.2.BCG 1
La1.6;La3;M.canetti;lineage4.2.2 1
M.canetti;lineage2.1;lineage4.9 1
lineage2.2.1;lineage6.3 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 2
M.canetti;lineage2.1;lineage6.3 1
M.canetti;lineage4.9 2
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.1 1
La3;lineage2.1;lineage6.3 1
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9;lineage7 1
La2;lineage2.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9 1
lineage4.3.4.2.1 1
spoligotype Counts
spoligotype Count
None 110
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR323045 HR-TB lineage1;lineage4.9 None
SRR23961558 RR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR1063849 HR-TB lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR9786600 Sensitive lineage4.3.3 None
ERR4828872 RR-TB lineage4.2;lineage4.9 None
ERR4769452 Other lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR1183144 RR-TB lineage2.2.1 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
SRR6045053 Other lineage4 None
SRR28119805 Other lineage4.9 None
ERR752229 Other lineage4.5 None
ERR4769497 Other La1;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR9786220 Sensitive lineage4.3.3 None
ERR9786192 Sensitive lineage4.3.3 None
ERR9786342 Sensitive lineage4.3.3 None
SRR3675270 Other lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6046593 Other lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
SRR6046382 RR-TB lineage2.2.1 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
ERR2513228 Sensitive lineage4.3.3 gb
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR18549032 HR-TB lineage2.2.1.2;lineage7 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
ERR3283042 HR-TB lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR1180147 RR-TB lineage2.2.1.1 None
ERR4831117 HR-TB lineage4.9;lineage7 None
ERR3797046 HR-TB lineage4.9 None
ERR400530 Sensitive lineage4.3.3 gb
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR1180172 RR-TB lineage2.2.1 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR7240492 MDR-TB La1.7.1 None
ERR9786173 Sensitive lineage4.3.3 None
SRR1180410 Sensitive lineage4.9 None
SRR11662690 HR-TB lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR5341456 Other lineage4.9 None
ERR4811493 HR-TB lineage4.9 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR234659 HR-TB None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR4798262 HR-TB La1.2.BCG None
SRR7070275 Sensitive lineage4.3.3 None
SRR6046046 Other lineage4.9 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR26937107 MDR-TB lineage2.2.1 None
SRR6044942 HR-TB lineage4.9 None
ERR387051 RR-TB lineage4.9 None
ERR9786808 Sensitive lineage4.3.3 None
SRR6045347 Other lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR10315567 HR-TB lineage2.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2446566 Other lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR14066533 RR-TB lineage1.1.1 None
SRR3675456 RR-TB lineage4.9;lineage7 None
SRR1180413 Sensitive lineage4.9 None
ERR4769450 Other lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR21722058 Sensitive lineage4.3.3 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR9786843 Other None
SRR1640750 RR-TB None
SRR28351584 HR-TB lineage2.2.1 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
ERR502491 Sensitive lineage4.3.3 gh
SRR5341330 Other lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR6046878 Other lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR12142339 HR-TB lineage2.2.1 None
ERR702433 Sensitive lineage4.3.3 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR9119669 MDR-TB lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
ERR245815 Sensitive lineage4.3.4.2.1 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None