Rv1221 - c.552T>C
Drug resistance types
21 Sensitive
3 RR-TB
31 HR-TB
13 MDR-TB
0 Pre-XDR-TB
2 XDR-TB
42 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 26 |
| La1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.3.3 | 13 |
| M.canetti;lineage2.2 | 2 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.3.4.2.1 | 1 |
| La2;lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1 | 2 |
| lineage4 | 1 |
| lineage1;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 7 |
| La1.2.BCG | 1 |
| 3 | |
| lineage2.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage4.9;lineage7 | 4 |
| lineage2.2.1;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.4.1 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.2.1.1 | 3 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage2.2.1.2;lineage7 | 1 |
| lineage4.5 | 1 |
| lineage4.1.1.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 112 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119805 | Other | lineage4.9 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR7070275 | Sensitive | lineage4.3.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR9786600 | Sensitive | lineage4.3.3 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR9786220 | Sensitive | lineage4.3.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR502491 | Sensitive | lineage4.3.3 | gh | ERR245815 | Sensitive | lineage4.3.4.2.1 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR6045053 | Other | lineage4 | None | SRR6046046 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR5341456 | Other | lineage4.9 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR9786843 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR6046878 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283042 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR4810624 | MDR-TB | lineage2.2 | None | ERR387051 | Other | lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR702433 | Sensitive | lineage4.3.3 | None | ERR9786808 | Sensitive | lineage4.3.3 | None | ERR9786192 | Sensitive | lineage4.3.3 | None | ERR2446566 | Other | lineage4.9 | None | ERR2513228 | Sensitive | lineage4.3.3 | gb | SRR6045347 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11465279 | Sensitive | lineage4.3.4.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR1181091 | Other | lineage2.2.1.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR9786342 | Sensitive | lineage4.3.3 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR3675456 | RR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR234659 | Other | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | SRR1640750 | Other | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR752229 | Other | lineage4.5 | None | SRR28351584 | HR-TB | lineage2.2.1 | None | SRR21722058 | Sensitive | lineage4.3.3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | ERR13292132 | Sensitive | lineage4.3.3 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR5341330 | Other | lineage4.9 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4769450 | Other | lineage4.9 | None | SRR10315567 | HR-TB | lineage2.2.1 | None | SRR3675481 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR400530 | Sensitive | lineage4.3.3 | gb | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR9786173 | Sensitive | lineage4.3.3 | None | SRR11662690 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None |
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