Run ID: ERR9786600
Sample name:
Date: 02-04-2023 12:34:16
Number of reads: 896552
Percentage reads mapped: 93.14
Strain: lineage4.3.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.2 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777186 | p.Ala432Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472557 | n.712G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472614 | n.769G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472665 | n.820G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472669 | n.824_825insTAGG | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472695 | n.850C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472767 | n.922G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476517 | n.2860C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476524 | n.2867C>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476530 | n.2873C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476536 | n.2879G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476537 | n.2880A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476538 | n.2881A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476540 | n.2883C>G | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674659 | p.Arg153Gln | missense_variant | 0.1 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449066 | p.Thr188Lys | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4242182 | p.Ala774Ser | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4245578 | c.-936G>A | upstream_gene_variant | 0.11 |
aftB | 4268455 | p.Val128Leu | missense_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |