Rv3596c - c.2058T>C

Note: the variant has been searched for in a non-representative convenience dataset of samples from the ENA. This sampleset may contain overrepresentation in certain categories such as geographic source, drug resistance type and lineage. Interpretation of variant frequencies should be performed cautiously with this in mind.
Drug resistance types
11 Sensitive 2 RR-TB 29 HR-TB 8 MDR-TB 2 Pre-XDR-TB 3 XDR-TB 31 Other
lineage Counts
lineage Count
lineage5.2 2
La1.7.1;lineage4.9 1
lineage4.9 24
M.canetti;lineage4.9 1
lineage2.2.1.1 4
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
lineage4.3.4.1 1
La1.7;lineage4.9;lineage7 3
La1.7;lineage4.2 1
La1.7;M.canetti;lineage4.9 4
lineage4.6.3;lineage4.9 1
M.canetti;lineage2.2 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage3.1;lineage9 1
La1.7;lineage4.9 6
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
lineage4.3.1;lineage4.9;lineage6 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage4.9 1
lineage2.2.1 5
lineage2.1;lineage4.1.4;lineage4.9 1
lineage1.1.3.1 1
La1.7;lineage3;lineage4.9;lineage7 1
lineage4.9;lineage7 1
La3;lineage4.9 1
La1.7.X-unk4;lineage4.9 1
La1.7;lineage3.1;lineage4 1
La1.7.1;La1.7.X-unk4 1
1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.1.1.3 1
lineage4.9;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
La1;lineage4.9 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage1.2.1.1 1
lineage1;lineage4.9 1
lineage3.1.3 1
spoligotype Counts
spoligotype Count
None 86
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4872094 MDR-TB lineage5.2 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
SRR1181091 Other lineage2.2.1.1 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
ERR176751 Other lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
SRR6044835 Other lineage4.9 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR23961559 Other La1.7;lineage4.2 None
SRR1180147 Other lineage2.2.1.1 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
ERR181824 HR-TB lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
SRR6045555 Other lineage4.9 None
SRR6046397 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR176651 Other lineage4.9 None
SRR25827418 XDR-TB lineage3.1;lineage9 None
SRR3675385 Other La1.7;lineage4.9 None
ERR2026698 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
SRR3675501 Other La1.7;lineage4.9 None
SRR5341432 Sensitive La1.7;lineage4.9;lineage7 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR6866410 Sensitive lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
ERR13267017 Pre-XDR-TB lineage2.2.1 None
SRR6046133 HR-TB lineage4.9 None
SRR6045219 HR-TB lineage4.9 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR176779 HR-TB lineage4.9 None
ERR4816466 HR-TB lineage4.9 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR1184024 RR-TB lineage2.2.1.1 None
ERR779852 Sensitive lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
SRR1183106 RR-TB lineage2.2.1.1 None
SRR5341456 Other lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
ERR212034 HR-TB La1.7;lineage4.9 None
SRR19295647 Sensitive lineage4.9 None
ERR3445502 Sensitive lineage4.9;lineage7 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
SRR3675510 Sensitive La3;lineage4.9 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR6358991 HR-TB None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR9119500 MDR-TB lineage5.2 None
ERR1063849 HR-TB lineage4.9 None
SRR1180172 Other lineage2.2.1 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
SRR26937107 MDR-TB lineage2.2.1 None
ERR1034634 HR-TB lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
SRR1183144 Other lineage2.2.1 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
SRR5341313 Sensitive La1.7;lineage4.9;lineage7 None
SRR3675492 Other La1.7;lineage4.9 None
ERR2026697 HR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4814734 Other lineage1.2.1.1 None
ERR181887 Other lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4769474 HR-TB lineage4.9 None