lineage | Count |
---|---|
lineage3 | 6 |
94 | |
lineage2.2.1 | 15 |
lineage2.2 | 6 |
lineage4.1.1.3 | 12 |
lineage4.1 | 1 |
lineage4.3 | 1 |
lineage4.3.4.2.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4.5 | 1 |
lineage4.1.1 | 1 |
lineage4.3.3 | 3 |
lineage4.9 | 14 |
lineage4 | 3 |
lineage2.2.1.1 | 4 |
lineage4.1.2.1 | 7 |
lineage1.1 | 1 |
lineage4.3.3;lineage1.2.1.2.1 | 1 |
lineage4.2.1.1 | 1 |
lineage4.6.2.2 | 4 |
lineage3.1 | 2 |
La2 | 1 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.6.1.1 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.2 | 1 |
spoligotype | Count |
---|---|
None | 192 |
ID | Drug resistance | Lineage | Country iso2 | SRR17658565 | Other | lineage3 | None | SRR1640750 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR22424796 | MDR-TB | lineage4.1.1.3 | None | SRR22424842 | HR-TB | lineage4.1.1.3 | None | SRR25515659 | HR-TB | lineage2.2.1 | None | SRR25515168 | HR-TB | lineage2.2.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR176751 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR158583 | HR-TB | None | ERR1035239 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675222 | Other | None | SRR3675270 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675488 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR671838 | MDR-TB | lineage4.5 | cn | ERR176643 | HR-TB | None | SRR3675558 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675502 | Other | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | ERR176740 | HR-TB | None | SRR3675510 | Other | None | SRR3675545 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR1035162 | Other | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341418 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR3275220 | Other | lineage3 | nl | ERR2446563 | Other | lineage2.2.1 | nl | ERR1035138 | MDR-TB | None | ERR1023509 | Other | None | ERR4820028 | Other | lineage4.3.3 | None | SRR5341330 | HR-TB | None | SRR5341456 | Other | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR5535933 | HR-TB | None | ERR4821830 | Sensitive | lineage4.3.3 | None | ERR2693239 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2446144 | Other | lineage3 | nl | SRR6044838 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6046046 | Other | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045399 | Other | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | ERR4798022 | Pre-XDR-TB | lineage4.1.1.3 | in | SRR6046299 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | ERR278594 | HR-TB | None | ERR4796433 | Sensitive | lineage4.1.1.3 | in | ERR4797004 | Sensitive | lineage4.1.1.3 | in | SRR6325444 | HR-TB | None | ERR4799292 | Sensitive | lineage4.1.1.3 | in | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6046878 | HR-TB | lineage4 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4797375 | Sensitive | lineage4.1.1.3 | in | ERR323036 | HR-TB | None | ERR4797338 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR3077978 | Other | lineage1.1 | None | ERR4800239 | Sensitive | lineage4.1.1.3 | in | ERR4831117 | HR-TB | None | ERR4815695 | Sensitive | lineage4.3.3;lineage1.2.1.2.1 | gb | ERR4831546 | HR-TB | lineage2.2 | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6797619 | MDR-TB | lineage4.1.1.3 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR294248 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR294266 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | ERR323055 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR133986 | HR-TB | None | ERR1034652 | Other | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3283017 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797083 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR4769457 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769450 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4798406 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR702404 | HR-TB | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR8976043 | HR-TB | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR987722 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR990545 | Other | lineage3 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1172310 | HR-TB | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13837499 | Sensitive | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13861372 | Other | lineage4.9 | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR14782405 | HR-TB | None |
---|