Rv0006 - c.531G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
18 Sensitive
4 RR-TB
36 HR-TB
6 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
50 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.7.1 | 1 |
| lineage4.9 | 45 |
| lineage2.2.1 | 6 |
| M.canetti;lineage4.9 | 3 |
| lineage2.2.1.2 | 3 |
| La1.7;lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.1 | 4 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 3 |
| lineage4.9;lineage7 | 4 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 1 |
| 2 | |
| lineage5.2 | 2 |
| La1.8.1 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La3;lineage4.9 | 5 |
| lineage4 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| La1.7;lineage4.9 | 4 |
| lineage2.1;lineage4.9 | 1 |
| lineage4.6.1.1 | 2 |
| lineage4.3.4.2.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La2;lineage2.2 | 1 |
| lineage4.8 | 1 |
| lineage4.5 | 1 |
| M.canetti;lineage1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 114 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1792478 | HR-TB | La1.7.1 | None | SRR29096530 | Sensitive | lineage4.9 | None | ERR13285191 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR3675441 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR6359082 | Other | lineage4.9 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675555 | HR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR6046878 | Other | lineage4.9 | None | ERR13285192 | Sensitive | lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | SRR26399239 | Sensitive | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR387051 | Other | lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR6046046 | Other | lineage4.9 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR3675461 | RR-TB | lineage4.9 | None | SRR29096394 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | Other | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR212138 | HR-TB | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR4769452 | Other | lineage4.9 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR212001 | HR-TB | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR6358979 | Other | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675495 | Other | lineage2.1;lineage4.9 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR5341330 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6046382 | Sensitive | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR26331611 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | SRR3675539 | HR-TB | lineage4.9;lineage7 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR6046611 | Sensitive | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | SRR28351347 | Other | lineage3 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR13264981 | Sensitive | La1.7;lineage4.9 | None | SRR29096897 | Sensitive | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161037 | Other | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR752229 | Other | lineage4.5 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None |
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