Rv2245 - c.1047G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
4 RR-TB
6 HR-TB
7 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
180 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 174 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage2.2.1.1 | 4 |
| lineage4.2;lineage4.9 | 2 |
| lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.8.2 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 198 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR26112056 | Other | La1.8.1 | None | SRR8902561 | Other | La1.8.1 | None | SRR1792135 | Other | La1.8.1 | None | SRR7236282 | Other | La1.8.1 | None | SRR1792128 | Other | La1.8.1 | None | SRR1792277 | Other | La1.8.1 | None | SRR12554456 | Other | La1.8.1 | None | SRR12554459 | Other | La1.8.1 | None | SRR1792131 | Other | La1.8.1 | None | SRR7240404 | Other | La1.8.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR7236132 | Other | La1.8.1 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR7240237 | Other | La1.8.1 | None | SRR7240507 | Other | La1.8.1 | None | SRR8902557 | Other | La1.8.1 | None | SRR11294534 | Other | La1.8.1 | None | SRR1791907 | Other | La1.8.1 | None | SRR7240105 | Other | La1.8.1 | None | SRR1792036 | Other | La1.8.1 | None | SRR29055503 | Other | La1.8.1 | None | SRR1791745 | Other | La1.8.1 | None | SRR1792140 | Other | La1.8.1 | None | SRR1792141 | Other | La1.8.1 | None | SRR7240425 | Other | La1.8.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR7236384 | Other | La1.8.1 | None | SRR1792139 | Other | La1.8.1 | None | SRR7236353 | Other | La1.8.1 | None | SRR29055394 | Other | La1.8.1 | None | SRR7236207 | Other | La1.8.1 | None | SRR7236245 | Other | La1.8.1 | None | SRR7236399 | Other | La1.8.1 | None | SRR7236178 | Other | La1.8.1 | None | SRR7236240 | Other | La1.8.1 | None | SRR7236411 | Other | La1.8.1 | None | SRR1791847 | Other | La1.8.1 | None | SRR7236410 | Other | La1.8.1 | None | SRR26112051 | Other | La1.8.1 | None | SRR7236257 | Other | La1.8.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR7236382 | Other | La1.8.1 | None | SRR1792154 | Other | La1.8.1 | None | SRR7240435 | Other | La1.8.1 | None | SRR29053557 | Other | La1.8.1 | None | SRR28170798 | Other | La1.8.1 | None | SRR1792194 | Other | La1.8.1 | None | SRR7236322 | Other | La1.8.1 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR7240442 | Other | La1.8.1 | None | SRR7236241 | Other | La1.8.1 | None | SRR28170780 | Other | La1.8.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR1791765 | Other | La1.8.1 | None | SRR7236208 | Other | La1.8.1 | None | SRR7236210 | Other | La1.8.1 | None | SRR7236244 | Other | La1.8.1 | None | SRR7236246 | Other | La1.8.1 | None | SRR7236395 | Other | La1.8.1 | None | SRR1792134 | Other | La1.8.1 | None | SRR7236157 | Other | La1.8.1 | None | ERR13291500 | Other | La1.8.1 | None | SRR29096410 | Other | lineage4.9 | None | SRR1792133 | Other | La1.8.1 | None | SRR14296288 | Other | La1.8.1 | None | SRR7236125 | Other | La1.8.1 | None | SRR7236152 | Other | La1.8.1 | None | SRR7236211 | Other | La1.8.1 | None | SRR7236352 | Other | La1.8.1 | None | SRR7240158 | Other | La1.8.1 | None | SRR8902560 | Other | La1.8.1 | None | SRR8902562 | Other | La1.8.1 | None | SRR7240319 | Other | La1.8.1 | None | SRR7236426 | Other | La1.8.1 | None | SRR26112556 | Other | La1.8.1 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR11294533 | Other | La1.8.1 | None | SRR7236237 | Other | La1.8.1 | None | SRR12554463 | Other | La1.8.1 | None | SRR7240540 | Other | La1.8.1 | None | SRR7240210 | Other | La1.8.1 | None | SRR7236135 | Other | La1.8.1 | None | SRR7236127 | Other | La1.8.1 | None | SRR12554457 | Other | La1.8.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | SRR7236222 | Other | La1.8.1 | None | SRR12554460 | Other | La1.8.1 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR7240322 | Other | La1.8.1 | None | SRR7236356 | Other | La1.8.1 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR12554454 | Other | La1.8.1 | None | SRR12554468 | Other | La1.8.1 | None | SRR7236358 | Other | La1.8.1 | None | SRR7236136 | Other | La1.8.1 | None | SRR1792269 | Other | La1.8.1 | None | SRR1792307 | Other | La1.8.1 | None | SRR1792447 | Other | La1.8.1 | None | SRR1792153 | Other | La1.8.1 | None | SRR7236319 | Other | La1.8.1 | None | SRR7236346 | Other | La1.8.1 | None | SRR7236363 | Other | La1.8.1 | None | SRR7236110 | Other | La1.8.1 | None | SRR7236355 | Other | La1.8.1 | None | SRR7236323 | Other | La1.8.1 | None | SRR29881211 | Other | La1.8.1 | None | SRR7236151 | Other | La1.8.1 | None | SRR12554464 | Other | La1.8.1 | None | SRR12554455 | Other | La1.8.1 | None | SRR1792126 | Other | La1.8.1 | None | SRR12554469 | Other | La1.8.1 | None | SRR7236124 | Other | La1.8.1 | None | SRR1791956 | Other | La1.8.1 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR7236215 | Other | La1.8.1 | None | ERR4798504 | RR-TB | lineage3 | None | SRR12554458 | Other | La1.8.1 | None | SRR12554465 | Other | La1.8.1 | None | SRR1791884 | Other | La1.8.1 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR7236254 | Other | La1.8.1 | None | SRR26112328 | Other | La1.8.1 | None | SRR1792136 | Other | La1.8.1 | None | SRR1792132 | Other | La1.8.1 | None | SRR11294520 | Other | La1.8.1 | None | SRR1792198 | Other | La1.8.1 | None | SRR26112256 | Other | La1.8.1 | None | SRR1791739 | Other | La1.8.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR7240396 | Other | La1.8.1 | None | SRR7236118 | Other | La1.8.1 | None | SRR12554467 | Other | La1.8.1 | None | SRR7236134 | Other | La1.8.1 | None | SRR14296421 | Other | La1.8.1 | None | SRR29053334 | Other | La1.8.1 | None | SRR7240184 | Other | La1.8.1 | None | SRR7236166 | Other | La1.8.1 | None | SRR7236276 | Other | La1.8.1 | None | SRR7236236 | Other | La1.8.1 | None | SRR14296191 | Other | La1.8.1 | None | SRR1184024 | RR-TB | lineage2.2.1.1 | None | SRR7236321 | Other | La1.8.1 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1791945 | Other | La1.8.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | SRR8902559 | Other | La1.8.1 | None | SRR1791933 | Other | La1.8.1 | None | SRR1792283 | Other | La1.8.1 | None | SRR7236191 | Other | La1.8.1 | None | SRR1791927 | Other | La1.8.1 | None | SRR1792305 | Other | La1.8.1 | None | SRR7236326 | Other | La1.8.1 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR1791949 | Other | La1.8.1 | None | SRR1792125 | Other | La1.8.1 | None | SRR22314235 | Other | La1.8.1 | None | SRR12554461 | Other | La1.8.1 | None | SRR12554466 | Other | La1.8.1 | None | SRR7236284 | Other | La1.8.1 | None | SRR7236318 | Other | La1.8.1 | None | ERR046926 | Sensitive | lineage4.8.2 | gb | SRR8902563 | Other | La1.8.1 | None | SRR7236206 | Other | La1.8.1 | None | SRR7236261 | Other | La1.8.1 | None | SRR7240211 | Other | La1.8.1 | None | SRR12554470 | Other | La1.8.1 | None | SRR1792017 | Other | La1.8.1 | None | SRR7236212 | Other | La1.8.1 | None | SRR7236214 | Other | La1.8.1 | None | SRR7236247 | Other | La1.8.1 | None | SRR7236396 | Other | La1.8.1 | None | SRR7236402 | Other | La1.8.1 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR7236114 | Other | La1.8.1 | None | SRR7236242 | Other | La1.8.1 | None | SRR7236255 | Other | La1.8.1 | None | SRR29052640 | Other | La1.8.1 | None | SRR1792008 | Other | La1.8.1 | None | SRR12554462 | Other | La1.8.1 | None | SRR18914184 | Other | La1.8.1 | None | SRR1792196 | Other | La1.8.1 | None | SRR7236320 | Other | La1.8.1 | None | SRR1792127 | Other | La1.8.1 | None | SRR1792328 | Other | La1.8.1 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR7236243 | Other | La1.8.1 | None | SRR7236283 | Other | La1.8.1 | None | SRR1792197 | Other | La1.8.1 | None | SRR1791928 | Other | La1.8.1 | None | SRR1791941 | Other | La1.8.1 | None | SRR1791952 | Other | La1.8.1 | None | SRR1792129 | Other | La1.8.1 | None | SRR1792137 | Other | La1.8.1 | None | SRR1792130 | Other | La1.8.1 | None | SRR1792138 | Other | La1.8.1 | None | SRR1792195 | Other | La1.8.1 | None |
|---|
