Rv1630 - c.162C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
47 Sensitive
7 RR-TB
28 HR-TB
17 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
65 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 62 |
| lineage4.1.1.3 | 3 |
| lineage2.2.1 | 16 |
| La3;lineage4.9 | 15 |
| lineage4.3.4.2.1 | 2 |
| M.canetti;lineage4.9 | 2 |
| lineage4.9;lineage9 | 2 |
| lineage4.1 | 1 |
| lineage4 | 2 |
| lineage4.1.2.1 | 1 |
| lineage3 | 4 |
| La2;lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 1 |
| lineage2.2.1.1 | 4 |
| lineage4.1.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 3 |
| 5 | |
| La1.8.1 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La2;lineage4.9 | 1 |
| lineage6.1.1 | 2 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.6.2.2 | 4 |
| lineage3.1.2.1 | 1 |
| lineage4.3.3 | 1 |
| lineage4.8 | 3 |
| lineage4.6.3;lineage4.9 | 2 |
| M.canetti;lineage2.2 | 2 |
| lineage1.1.1 | 1 |
| lineage4.9;lineage6.3 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage4 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2 | 1 |
| lineage1.1.3.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.7 | 1 |
| lineage4.3.2.1 | 2 |
| La1.2 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 168 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR502511 | Sensitive | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR5341384 | HR-TB | lineage4.9 | None | ERR502510 | Sensitive | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR5341366 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR124636 | Sensitive | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR9786525 | Other | lineage4 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9896144 | Other | lineage3 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR5341303 | Sensitive | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR1035122 | Sensitive | lineage4.9 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR3675246 | Other | lineage4.9 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR28119827 | Other | La3;lineage4.9 | None | SRR29096150 | Other | lineage4.9 | None | ERR13266555 | Pre-XDR-TB | lineage2.2.1 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR9970980 | Other | lineage4.1.2 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR5341298 | Sensitive | lineage4.9 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | ERR4024991 | Other | lineage4.8;lineage4.9 | None | SRR5341469 | HR-TB | lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | SRR1180996 | Sensitive | lineage4.9 | None | ERR9786843 | Other | None | ERR987722 | MDR-TB | None | ERR212001 | HR-TB | None | SRR1180226 | HR-TB | lineage4.9 | None | ERR6866022 | Other | lineage4.8;lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR7236177 | Other | La1.8.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR137286 | Other | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR5341455 | Sensitive | lineage4.9 | None | SRR1791747 | Other | La1.8.1 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR323039 | HR-TB | La2;lineage4.9 | None | ERR702405 | Sensitive | lineage4.9 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | SRR3675235 | Sensitive | lineage4.9 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283031 | Sensitive | La3;lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR3799304 | Other | lineage6.1.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | SRR29050770 | Sensitive | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | SRR5341470 | MDR-TB | lineage4.9;lineage9 | None | ERR294266 | HR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR4798504 | RR-TB | lineage3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR751326 | Other | lineage4.9 | None | SRR12006550 | Sensitive | None | ERR987729 | HR-TB | lineage3.1.2.1 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR5341308 | Sensitive | lineage4.9 | None | SRR6044835 | Other | lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR176740 | Other | lineage4.9 | None | ERR323085 | Sensitive | lineage4.9 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR26159047 | Other | lineage4.6.3;lineage4.9 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR21690362 | Other | lineage1.1.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | SRR6045795 | Sensitive | lineage2.2.1 | None | ERR4796254 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1158918 | Sensitive | lineage4.9 | None | SRR29097079 | Sensitive | lineage3 | None | ERR11082350 | MDR-TB | lineage4.6.2.2 | None | ERR12015084 | Other | lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283028 | Other | La3;lineage4 | None | ERR1063896 | Sensitive | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | SRR1159378 | Other | lineage4.9 | None | ERR12015086 | RR-TB | lineage4.8 | None | ERR6358979 | Other | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | ERR4798099 | Other | lineage4.9 | None | ERR13278785 | MDR-TB | lineage4.6.2.2 | None | SRR1169249 | Other | lineage4.9 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR11465665 | Other | lineage4.1.1.3 | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | SRR15014655 | Other | M.canetti;lineage1 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR5341461 | HR-TB | lineage4.9 | None | ERR9787014 | Other | lineage6.1.1 | None | SRR6044876 | Sensitive | lineage4.9 | None | ERR990545 | Other | lineage3 | None | ERR3273109 | HR-TB | lineage4 | None | ERR9786507 | RR-TB | lineage4.7 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR4799378 | Sensitive | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR6866639 | Other | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR29097066 | Sensitive | lineage4.9 | None | SRR29097026 | Other | lineage4.9 | None | ERR736834 | Sensitive | lineage4.9 | None | SRR3675585 | Sensitive | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4797264 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR7821173 | Sensitive | lineage4.3.2.1 | None | SRR29097037 | Other | lineage4.9 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR11252612 | Other | La3;lineage4.9 | None | SRR5341387 | Other | lineage4.9 | None | ERR212033 | Other | lineage4.9 | None | ERR4797474 | Sensitive | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR736865 | HR-TB | lineage4.3.2;lineage4.9 | None | SRR7535082 | Sensitive | lineage4.9 | None | SRR29096410 | Other | lineage4.9 | None | ERR323062 | Sensitive | lineage4.9 | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | ERR323066 | Sensitive | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR1172310 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None |
|---|
